| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,836,145 – 9,836,236 |
| Length | 91 |
| Max. P | 0.633010 |
| Location | 9,836,145 – 9,836,236 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.42144 |
| G+C content | 0.40883 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -8.81 |
| Energy contribution | -8.69 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9836145 91 - 22422827 ------CAAAAACACCACUCUUUCAUGCUCCCUUAAACACACACUCAGGUUGGCUAAAU--UAUGCCGUGCCAAAAAGUCUGUUUAUGGCAUUAAAUUU ------..............(((.(((((....((((((.((.....(((((((.....--...)))).))).....)).)))))).))))).)))... ( -17.40, z-score = -1.78, R) >droPer1.super_15 1817211 80 - 2181545 -----------------CACCUCCCCCUUCCCCUCAGUAGGGG--GGAGUGAACAAAAUUAUAUGUCGUGCCAAAAAGUCUGUUUAUGGCAUUAUAUUG -----------------(((..((((((.(......).)))))--)..)))...........((((.((((((.(((.....))).)))))).)))).. ( -25.30, z-score = -2.86, R) >dp4.chrXL_group3a 1615552 80 + 2690836 -----------------CACCUCCCCCUUCCCCUCAGUACGGG--GGAGUGAACCAAAUUAUAUGUCGUGCCAAAAAGUCUGUUUAUGGCAUUAUAUUU -----------------(((.((((((.............)))--))))))...........((((.((((((.(((.....))).)))))).)))).. ( -22.52, z-score = -2.48, R) >droSim1.chrX 7835127 91 - 17042790 ------CAAAAACACCACUCUUUCAUGCUCCCUUAAACACACACUCAGGUUGGCUAAAU--UAUGCCGUGCCAAAAAGUCUGUUUAUGGCAUUAAAUUU ------..............(((.(((((....((((((.((.....(((((((.....--...)))).))).....)).)))))).))))).)))... ( -17.40, z-score = -1.78, R) >droSec1.super_15 600832 91 - 1954846 ------CAAAAACACCACUCUUUCAUGCUCCCUUAAACACACACUCAGGUUGGCUAAAU--UAUGCCGUGCCAAAAAGUCUGUUUAUGGCAUUAAAUUU ------..............(((.(((((....((((((.((.....(((((((.....--...)))).))).....)).)))))).))))).)))... ( -17.40, z-score = -1.78, R) >droEre2.scaffold_4690 13474253 91 + 18748788 ------CAAGAACACCACUCUUUCAUGCUCCCUUAAACAGACACUCAGGUUGGCUAAAU--UAUGCCGUGCCAAAAAGUCUGUUUAUGGCAUUAAAUUU ------..............(((.(((((....(((((((((.....(((((((.....--...)))).))).....))))))))).))))).)))... ( -23.60, z-score = -3.19, R) >droYak2.chrX 18428843 97 - 21770863 CAAAGAAGACGCCACCACUCUUUCAUGCUCCCUUAAACACACACUCAGCUUGGCUAAAU--UAUGCCGUGCCAAAAAGUCUGUUUAUGGCAUUAAAUUU ....(((((.(......)))))).(((((....((((((.((.....((.((((.....--...)))).))......)).)))))).)))))....... ( -16.80, z-score = -0.61, R) >consensus ______CAAAAACACCACUCUUUCAUGCUCCCUUAAACACACACUCAGGUUGGCUAAAU__UAUGCCGUGCCAAAAAGUCUGUUUAUGGCAUUAAAUUU ...................................................(((..........)))((((((.(((.....))).))))))....... ( -8.81 = -8.69 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:49 2011