| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,821,935 – 9,822,008 |
| Length | 73 |
| Max. P | 0.937453 |
| Location | 9,821,935 – 9,822,008 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 72.05 |
| Shannon entropy | 0.50378 |
| G+C content | 0.40838 |
| Mean single sequence MFE | -16.96 |
| Consensus MFE | -8.38 |
| Energy contribution | -9.54 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9821935 73 + 22422827 AGUGCACUAAAAUCAACAUAAUUAAUUGGCCGAUAACAAUUGGCAUAAAAGGCACGGCAACACGAUUGAUGUC .((((.((........((........))((((((....)))))).....))))))((((.((....)).)))) ( -15.60, z-score = -1.94, R) >droSec1.super_15 586674 73 + 1954846 AGUGCACUAAAAUCAACAUAAUUAAUUGGCCGAUAACAAUUGGCAUAAAAGGCACGGCAUCACGAUUGAUGUC .((((.((........((........))((((((....)))))).....))))))(((((((....))))))) ( -20.20, z-score = -3.61, R) >droYak2.chrX 18414685 73 + 21770863 AGUGCACUAAAAUCAACAUGAUUAACUGGCCGAUAACAAUUGGCACAAACGGCACGGCAUCUCGAUUGAUGUC .((((.....((((.....))))...((((((((....)))))).))....))))((((((......)))))) ( -21.70, z-score = -3.47, R) >droEre2.scaffold_4690 13459406 73 - 18748788 AGUGCAGCGAAAUCAACAUAAUUAAUUGACCGAUAACAGUUGGCAUAAAAGGCACGGCAUCGCGAUUGAUGUC .((((...(....)............((.(((((....)))))))......))))(((((((....))))))) ( -15.40, z-score = -0.62, R) >droWil1.scaffold_181096 9329494 68 - 12416693 ----CACUAACAA-AAUUUGUGCAGGAUUCGUGCAAAAAUUUGCCUCAACGAAAUAUCGAUGGGAUCAGCCUC ----........(-(((((.((((.(...).)))).))))))..((((.(((....))).))))......... ( -11.90, z-score = -0.31, R) >consensus AGUGCACUAAAAUCAACAUAAUUAAUUGGCCGAUAACAAUUGGCAUAAAAGGCACGGCAUCACGAUUGAUGUC .((((...........((........))((((((....)))))).......))))(((((((....))))))) ( -8.38 = -9.54 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:47 2011