| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,793,898 – 10,793,982 |
| Length | 84 |
| Max. P | 0.524192 |
| Location | 10,793,898 – 10,793,982 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 62.77 |
| Shannon entropy | 0.67761 |
| G+C content | 0.40020 |
| Mean single sequence MFE | -14.95 |
| Consensus MFE | -7.04 |
| Energy contribution | -5.79 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10793898 84 + 23011544 ------------UCGUUAGCUGACCCAGUUAACGUGUGGAAUCAUCGAGAACUUCCUGGUCGAAAGAUUCAUUUUCACCAUGCUCGCCUUUAUUCA ------------.(((((((((...)))))))))....((((...((((.......((((.(((((.....)))))))))..)))).....)))). ( -18.50, z-score = -0.96, R) >droEre2.scaffold_4929 12004828 83 - 26641161 ------------UCGUUGGCUGACCCAGUUAGCUUCUGGAAACAUCGAGAACUUCCUGGCCAAAAAAUUCAUUUUUGUCAUACUCG-CUUUAUUCA ------------.....(((....((((..((.((((.((....)).))))))..)))).((((((.....))))))........)-))....... ( -15.70, z-score = -0.64, R) >droYak2.chr2L 7200120 68 + 22324452 ------------UCGUUGUCUGACCCACUUAGCUUGUGGAAACAUCGAGAACCUC---------------AUUUUCGCCAUACUCG-UUUUAUUCA ------------.((..((.((..((((.......))))......((((((....---------------.)))))).)).)).))-......... ( -9.00, z-score = 0.17, R) >droSec1.super_3 6212401 84 + 7220098 ------------UCGUUAGCUGACCCAGUUAACGUGCGGAAUCAUCGAGAACUUCCUGGUCGAAAGAUUCAUUUUCGCCAUACUCGCUUUUAUUCA ------------.(((((((((...))))))))).((((((((.....))..))))(((.((((((.....))))))))).....))......... ( -20.30, z-score = -1.57, R) >droSim1.chr2L 10596614 75 + 22036055 ------------UCGUUAGCUGACCCAGUUAACGUGUGGAAUCAUCGAGAACUUCCUGGUCGAAAGAUUCAUU---------CUUGCUUUUAUUCA ------------.(((((((((...)))))))))....((((...((((((.....(((((....)).)))))---------)))).....)))). ( -17.50, z-score = -1.20, R) >droWil1.scaffold_180703 3604946 96 + 3946847 CCUUUUUCCAUUCCAUUUCUCGUGAUAAGAUUUGUGUUUAAAAUUUAAGAACCUAAAAACAGAUUUUACUUCCUUUUUGGUACUUGCUUUUUUUAA ............(((........(.((((((((((.((((.............)))).)))))))))))........)))................ ( -8.71, z-score = 0.55, R) >consensus ____________UCGUUAGCUGACCCAGUUAACGUGUGGAAACAUCGAGAACUUCCUGGUCGAAAGAUUCAUUUUCGCCAUACUCGCUUUUAUUCA ..............((((((((...)))))))).....((((...((((.................................)))).....)))). ( -7.04 = -5.79 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:59 2011