| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,780,118 – 9,780,217 |
| Length | 99 |
| Max. P | 0.936468 |
| Location | 9,780,118 – 9,780,217 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.41 |
| Shannon entropy | 0.49628 |
| G+C content | 0.39002 |
| Mean single sequence MFE | -21.27 |
| Consensus MFE | -6.39 |
| Energy contribution | -7.92 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9780118 99 - 22422827 --CAAGCUG--CGAGUGACAAGACAAAUGUCUAGAGGCAAUAACAAAAAAUACAUAACACACACUGACGAGAGGGGAAUUUUCCCAGAAAUAUCGCAGAUUAC--- --....(((--((((((...((((....))))...(.......).............))).............((((....)))).......)))))).....--- ( -20.10, z-score = -2.81, R) >droEre2.scaffold_4690 13411537 95 + 18748788 --CAAGUUG--CGAGUGGCAAGACAAAUGUCUAGAGGCAAUAA-AA---ACGCAUUACACACAGCUACAAACUGGGAAUUUUCCCAGAAAUAUCGCUGAUUAC--- --..(((((--((((((((.((((....))))....((.....-..---..))..........)))))...((((((....)))))).....)))).))))..--- ( -26.60, z-score = -3.80, R) >droYak2.chrX 18372338 98 - 21770863 --CAAGCUG--UGAGUGACAAGACAAACGUCUAGAGGCUAUAA-AAAGUAUAUAUUACACACGGCUACAAAAUGGGAACUUUCCCAGAAAUAUCGCAGAUUAC--- --..(((((--((.((((..((((....))))....(((....-..))).....)))).)))))))......(((((....))))).................--- ( -23.40, z-score = -3.06, R) >droSec1.super_15 540649 96 - 1954846 --CAAGCUG--CGAGUGACAAGACAAAUGUCUAGAGGCAAUAA-AAAAUACAUUUCACACACAG--ACGAAAGGGGAAUUUUCCCAGAAAUAUCGCAGAUUAC--- --....(((--(((((..(.((((....)))).)..)).....-.......(((((........--.(....)((((....)))).))))).)))))).....--- ( -24.30, z-score = -4.50, R) >droSim1.chrX_random 2794171 96 - 5698898 --CAAGCUG--CGAGUGACAAGACAAAUGUCUAGAGGCAAUAA-AAAAUACAUUUCACACACAG--ACGAAAGGGGAAUUUUCCCAGAAAUAUCGCAGAUUAC--- --....(((--(((((..(.((((....)))).)..)).....-.......(((((........--.(....)((((....)))).))))).)))))).....--- ( -24.30, z-score = -4.50, R) >droPer1.super_15 294647 104 + 2181545 UGUAAAAUGAAUACACGAAUACACAAAUCACCAGUAGAGACAAACAAAAACCAAUCA-AUA-GGAAACGAGUGUUUAAACAACCUGGAAAUAUCAGCUACUACGAG .(((...(((((((.((................((....)).........((.....-...-))...)).)))))))......((((.....))))....)))... ( -8.90, z-score = 0.46, R) >consensus __CAAGCUG__CGAGUGACAAGACAAAUGUCUAGAGGCAAUAA_AAAAUACAUAUCACACACAG__ACGAAAGGGGAAUUUUCCCAGAAAUAUCGCAGAUUAC___ ..............((((..((((....)))).........................................((((....)))).......)))).......... ( -6.39 = -7.92 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:42 2011