| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,768,091 – 9,768,198 |
| Length | 107 |
| Max. P | 0.890750 |
| Location | 9,768,091 – 9,768,198 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 126 |
| Reading direction | forward |
| Mean pairwise identity | 67.28 |
| Shannon entropy | 0.56258 |
| G+C content | 0.49141 |
| Mean single sequence MFE | -32.59 |
| Consensus MFE | -16.44 |
| Energy contribution | -15.95 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9768091 107 + 22422827 -GGGAGCCACGAGUGACUAUGUGUCGCACUGGACACUCUGC-AAUCUCA-CAUCCAAAUCAUCU-CAAUCUGCUUGCGAGCAGAAUUGCUGCAUACUUCUAGGCUGUCUAU--------------- -((.((((..(((((.(((.(((...)))))).))))).((-(((....-..............-...((((((....)))))))))))............)))).))...--------------- ( -27.69, z-score = -0.19, R) >droSim1.chrX_random 2786198 105 + 5698898 -GGGAGCCACGAGUGGCUAAGUGUCGCACUGGACACUCUGC-AAUCUCA-CAUCGAAAUCAUCU-CAAUCUGUAUGCGAGCAAAAUUGCUGCAUACUUCUAGGCUGUCU----------------- -((.((((..(((..((..((((((......))))))..))-...))).-..............-......((((((.((((....)))))))))).....)))).)).----------------- ( -37.00, z-score = -3.39, R) >droSec1.super_15 524340 105 + 1954846 -GGGAGCCACGAGUGGCUAAGUGUCGCACUGGACACUCUGC-AAUCUCA-CAUCGAAAUCAUCC-CAAUCUGUAUGCGAGCAAAAUUGCUGCAUACUUCUAGGCUGUCU----------------- -((.((((..(((..((..((((((......))))))..))-...))).-..............-......((((((.((((....)))))))))).....)))).)).----------------- ( -37.00, z-score = -3.24, R) >droYak2.chrX 18360289 105 + 21770863 -GGGAGCCACGAGUGUCCGAGUGUCGCACUGGACACUCUGGGAAUCUCG-CAUUCAAAUUAUCU-CAAUAUGCUUGCGCGCAGAAUCGCUGCAUACUUUUAGGCUGCU------------------ -((.((((.((((..((((((((((......))))))).)))...))))-..............-...(((((..(((........))).)))))......)))).))------------------ ( -36.00, z-score = -1.88, R) >droEre2.scaffold_4690 13398193 104 - 18748788 -GGGAGCCACGAGUGGCUAAGUGUCGUACUGGACACUCCGG-AAUCUCG-CAUACAAAUCAUAU-CGGGCUGCUGGCGAUCAGAAAUACAGCAUACUUUUGGGCUGCU------------------ -((.((((..((((((((.((((((......))))))((((-...((((-.(((.......)))-))))...)))).............))).)))))...)))).))------------------ ( -30.50, z-score = -0.62, R) >dp4.chrXL_group3a 999258 125 + 2690836 GCCCACUCUCUGGCUAUCACGUAUCUCUCUGGUUGCUACAG-AAUAUCAUCAUCCAACUCAUUUGUGGCAUGCCAUUGGGCGGCGAGGGUAAAAGAAUUGAAGAUGAUACCUUUUGAAUACUCUAC (((........))).....(((..(((..((((((((((((-(..................))))))))).))))..)))..)))((((((........((((.......))))....)))))).. ( -27.37, z-score = 0.39, R) >consensus _GGGAGCCACGAGUGGCUAAGUGUCGCACUGGACACUCUGC_AAUCUCA_CAUCCAAAUCAUCU_CAAUCUGCUUGCGAGCAGAAUUGCUGCAUACUUCUAGGCUGUCU_________________ .((.((((..(((((.(((.(((...)))))).))))).....................................(((.((......))))).........)))).)).................. (-16.44 = -15.95 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:41 2011