| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,767,037 – 9,767,133 |
| Length | 96 |
| Max. P | 0.620520 |
| Location | 9,767,037 – 9,767,133 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 70.03 |
| Shannon entropy | 0.53837 |
| G+C content | 0.45692 |
| Mean single sequence MFE | -28.11 |
| Consensus MFE | -11.88 |
| Energy contribution | -11.19 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9767037 96 + 22422827 -AUAAUGGUCUUG-CCAGAGCAACUGAGUGUUAUUAUUAUAGCGCUGA--GUCAGAAGUGUUCCUCGACUCAUCGUUAUCUCAUUGACGCCGGAGUUGUC -....(((.....-)))..((((((..((((((.....((((((.(((--(((((........)).)))))).)))))).....))))))...)))))). ( -28.80, z-score = -2.02, R) >droSim1.chrX_random 2785151 95 + 5698898 -AUAAUGGUCUUUGCCAGAGCAACUGACU--UAUUAUUAUAGCGCUGA--GUCAGAAGCGUUCCUCGACUCAUCGUUAUCUUAUUGACGCCGGAGUUGUU -....((((....))))..((..((((((--((............)))--)))))..))......((((((..(((((......)))))...)))))).. ( -26.00, z-score = -1.59, R) >droSec1.super_15 523296 97 + 1954846 -AUAAUGGUCUUUGCCAGAGCAACUGACUGUUAUUAUUAUAGCGCUGA--GUCAGAAGUGUUCCUCGACUCAUCGUUAUCUUAUUGACGCCGGAGUUGUU -....((((....))))(((((.(((((((((((....)))))....)--)))))...)))))..((((((..(((((......)))))...)))))).. ( -28.20, z-score = -2.19, R) >droYak2.chrX 18359259 96 + 21770863 -AUAAUGGUAUUG-CCAGAGCAACUGACUAUUAUUAUUAUAGCGCUGA--GUCAGAAGUGCUCCUCGACUCAUCGUUAUCUCAUUGACGCCGGAGUUGUC -....(((.....-)))(((((.((((((.((((....)))).....)--)))))...)))))..((((((..(((((......)))))...)))))).. ( -27.60, z-score = -1.86, R) >droEre2.scaffold_4690 13397130 96 - 18748788 -AUAAUGGUCUUU-CCAGAGCAACUGACUGGUAUUAUUAUAGCGCUGA--GUCAGAAAAGUUCCUCGACUCAUCGUUAUCUCAUUGACGCCGGAGUUGUC -....(((.....-)))..((((((..((((..(((..((((((.(((--(((((........)).)))))).)))))).....)))..)))))))))). ( -28.60, z-score = -2.33, R) >dp4.chrXL_group3a 998339 94 + 2690836 AAAACCCAUCGUUGCCGUUUCGGUGGGGUA-UGGUAGGGCCCCAUUAAUAGCCAGAUGAGUCAGACGACGGGACGGUAUUCCAUUAUC-----UGUUGUC ...((.((((...((..((..((((((((.-.......))))))))))..))..)))).))..(((((((((..((....))....))-----))))))) ( -28.80, z-score = -0.51, R) >droPer1.super_15 282836 94 - 2181545 AAAACCCAUCGUUGCCGUUUCGGUGGGGUA-UGGUAGGGCCCCAUUAAUAGCCAGAUGAGUCAGACGACGGGACGGUAUUCCAUUAUC-----UGUUGUC ...((.((((...((..((..((((((((.-.......))))))))))..))..)))).))..(((((((((..((....))....))-----))))))) ( -28.80, z-score = -0.51, R) >consensus _AUAAUGGUCUUUGCCAGAGCAACUGACUA_UAUUAUUAUAGCGCUGA__GUCAGAAGAGUUCCUCGACUCAUCGUUAUCUCAUUGACGCCGGAGUUGUC .................((((..((((........................))))....))))..((((((..(((((......)))))...)))))).. (-11.88 = -11.19 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:40 2011