| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,733,169 – 9,733,280 |
| Length | 111 |
| Max. P | 0.904649 |
| Location | 9,733,169 – 9,733,280 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.52 |
| Shannon entropy | 0.40828 |
| G+C content | 0.42121 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -16.47 |
| Energy contribution | -16.89 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9733169 111 - 22422827 -UCAAUCUCCCAUUUCAGUUUGCCAAUUGUUUGUCACUUU---GGGCCUAAAUCGAGCUGACAGACAUGCAGACUGCGUUUUAAUCACCCGAUUGUUUACACCAGAGAACAAUUU -....((((......((((((((....(((((((((.(((---((.......))))).))))))))).)))))))).((..(((((....)))))...))....))))....... ( -31.20, z-score = -3.76, R) >droSim1.chrX 7760884 111 - 17042790 -UCAAUCUCCCAUUUCAGUUUGCCAAUUGUUUGUCACUUU---GGGCCUAAAUCAAGCUGACAGACAGGCAGACUGCGUUUUAAUCACCCGAUUGUUUACACGAGAGAACAAUUU -....((((.(....(((((((((...(((((((((.(((---((.......))))).)))))))))))))))))).((..(((((....)))))...))..).))))....... ( -35.10, z-score = -4.56, R) >droSec1.super_15 488809 110 - 1954846 -UCAAUCUCCCAUUUCAGUUUGCCAAUUGUUUGUCACUUU---GGGCCUAAAUCAAGCUGACAGACA-GCAGACUGCGUUUUAAUCACCCCAUUGUUUACACGAGAGAACAAUUU -....((((.(....((((((((....(((((((((.(((---((.......))))).)))))))))-)))))))).((..((((......))))...))..).))))....... ( -27.80, z-score = -2.94, R) >droYak2.chrX 18326003 112 - 21770863 UUUAAGCUCCCAUUUCAGUUUGGCAAUUGUUUGUCACUUU---GGGCUUAAAUCAAGCUGGUAGACUGGCAGACUGCUUUUUAAUCACCCGAUUGUUUAUACGAGAGAACAAUUU ...((((..(((........))).....((((((((((.(---.(((((.....))))).).))..)))))))).))))...........((((((((........)))))))). ( -23.20, z-score = -0.01, R) >droEre2.scaffold_4690 13362668 111 + 18748788 -UCAAUCUGCCAUUUCAGCUUGGCAAUUGUUUGUCACUUU---GGGCUUAAAUCAAGCUGGCAGACAGGCAAACUGCGUUUUAAUCACUCGAUUGUUUACACGAGAGAACAAUUU -....((((((....(((..((((((....))))))..))---)(((((.....)))))))))))(((.....)))........((.((((..((....)))))).))....... ( -27.50, z-score = -1.25, R) >droAna3.scaffold_13047 1468847 100 + 1816235 ------------UUUCUGGCUG-CGAUUGCCUGUCACUCCUGGGGAUGCAAAUCGAGAAAGC-GACUGGCAGCCUGAUUCGUUUUAAAUCACCCGGACAC-UGAGAGAAAAAGUC ------------((((((((..-.....))).....(((((((((((....)))((.(((((-((..((...))....)))))))...)).)))))....-.))))))))..... ( -23.80, z-score = 0.75, R) >consensus _UCAAUCUCCCAUUUCAGUUUGCCAAUUGUUUGUCACUUU___GGGCCUAAAUCAAGCUGACAGACAGGCAGACUGCGUUUUAAUCACCCGAUUGUUUACACGAGAGAACAAUUU ...............(((((((.(...((((((((((((...............))).))))))))).))))))))..............((((((((........)))))))). (-16.47 = -16.89 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:36 2011