Locus 13880

Sequence ID	dm3.chrX
Location	9,722,787 – 9,722,857
Length	70
Max. P	0.945498

overview

Window 0

Location	9,722,787 – 9,722,857
Length	70
Sequences	5
Columns	70
Reading direction	forward
Mean pairwise identity	68.49
Shannon entropy	0.56110
G+C content	0.47884
Mean single sequence MFE	-7.46
Consensus MFE	-7.10
Energy contribution	-7.10
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-0.84
Structure conservation index	0.95
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.51
SVM RNA-class probability	0.945498
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9722787 70 + 22422827
GCCGCGACAGCGUGACUAAAAUGCGCACGUCAAUCCUUUUUCCCCACUUUCCCCCCUAUAUUUUUACUUC
.....(((.((((.........))))..)))....................................... (  -7.00, z-score =  -1.37, R)
>droYak2.chrX 18315442 63 + 21770863
GCCGCGACAGCGUGACUAAAAUGCGCACGUCAAUCCUUUUCCCUCCCAUAUUUUUUUUUCUCC-------
.....(((.((((.........))))..)))................................------- (  -7.00, z-score =  -0.89, R)
>droEre2.scaffold_4690 13352276 61 - 18748788
GCCGCGACAGCGUGACUAAAACGCGCACGUCAAUCCUUUUUCCCCUAUAUAUAUUUCCUCC---------
.....(((.(((((.......)))))..)))..............................--------- (  -9.30, z-score =  -2.02, R)
>droPer1.super_15 234943 56 - 2181545
-CCGCGACAGCGUGACUAAAAUGCGCACGUCAAUCCUUUUUUCGCCCCCGCCCCCCU-------------
-....(((.((((.........))))..)))..........................------------- (  -7.00, z-score =  -0.22, R)
>droGri2.scaffold_15203 11773946 69 + 11997470
-UCACGACAGCGUGACUAAAAUGCGCACGUCAAUCCUUUUUUUCUUUUUUUUUUUUUGUAUUUUUGUUGC
-....(((.((((.........))))..)))....................................... (  -7.00, z-score =   0.32, R)
>consensus
GCCGCGACAGCGUGACUAAAAUGCGCACGUCAAUCCUUUUUCCCCCCUUUCUCUUUU_UAU_________
.....(((.((((.........))))..)))....................................... ( -7.10 =  -7.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:34 2011