| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,777,743 – 10,777,860 |
| Length | 117 |
| Max. P | 0.543569 |
| Location | 10,777,743 – 10,777,860 |
|---|---|
| Length | 117 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 92.26 |
| Shannon entropy | 0.15511 |
| G+C content | 0.49826 |
| Mean single sequence MFE | -34.86 |
| Consensus MFE | -28.52 |
| Energy contribution | -28.89 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10777743 117 - 23011544 -GUCCCAGAGACCCAGAGACAAU-GGAAAGUCGAGGAAUUAGCGCUGCGUUCCACAAUGAAAACAGAGCGCAAAACGGGAAGCUGUUCCACUAAUUGCAGCGUUUCGGAUUUCAUCCAU -.((((......((...(((...-.....)))..)).....(((((.(.(((......)))....)))))).....)))).(((((..........))))).....((((...)))).. ( -28.50, z-score = -0.28, R) >droSim1.chr2L 10579336 117 - 22036055 -GUCCCAGAGACCCAAAGACAAU-GGAAAGUCGCGGAAUUAGCGCUGCGUUCCACAAUGAAAACAGAGCGCAAAACGGGAAGCUGUUCCACUAAUUGCAGCGUUUCGGGUUUCAUCCAU -......(((((((...(((...-.....)))(((.((((((.(.(((((((.............))))))).(((((....))))).).)))))).).)).....)))))))...... ( -34.42, z-score = -1.52, R) >droSec1.super_3 6196323 117 - 7220098 -GUCCCAGAGACCCAUAGACAAU-GGAAAGUCGCGGAAUUAGCGCUGCGUUCCACAAUGAAAACAGAGCGCAAAACGGGAAGCUGUUCCACUAAUUGCAGCGUUUCGGGUUUCAUCCAU -......(((((((...(((...-.....)))(((.((((((.(.(((((((.............))))))).(((((....))))).).)))))).).)).....)))))))...... ( -34.42, z-score = -1.56, R) >droYak2.chr2L 7183534 117 - 22324452 -GUCCCAGAGACCCAGAGACAAU-GGCAAGUCGCGGAAUUAGCGUUGCGUUCCACAAUGAAAACAGAGCGCAAAGCGGGAAGCUGUUCCACUAAUUGCCGCGUUUCGGGUUUCAUACGU -......(((((((.(((((..(-(((((...(.(((((..((.((((((((.............)))))))).))((....))))))).)...)))))).))))))))))))...... ( -42.72, z-score = -3.23, R) >droEre2.scaffold_4929 11989036 117 + 26641161 -GUCCCAGAGACCCAGAGACAAU-GGAAAGCCGCGGAAUUAGCGCUGCGUUCCACAAUGAAAACAGAGCGCAAAGCGGGAAGCUGUUCCACUAAUUGCAGCGUUUCGGGUUUCAUCCAU -......(((((((.(((((...-((....))(((.((((((((((((((((.............))))))..))))((((....)))).)))))).).))))))))))))))...... ( -40.32, z-score = -2.65, R) >droAna3.scaffold_12916 14628432 119 - 16180835 GAACCCAAAGACCCAGAGACAAUGGGGAAGUCGUGAAAUUAGCGCUGCGUUCCACAAUGAAAACAGAGCGCAAAACGGGAAGCUGUUCUACUAAUUGCAACGUUUCGGAUUUCAUCCAU (((.((.....((((.......))))((((.(((..((((((...(((((((.............))))))).(((((....)))))...))))))...)))))))))..)))...... ( -30.22, z-score = -1.01, R) >droPer1.super_10 1996761 117 - 3432795 -GACCCAGAGACUCGGAGACAAU-GGAAGCUCGGGGAAUUAGCGCUGCGUUCCACAACGAAAACAGACCGCAAAGCGGGAAGCUGUUCUACUAAUUGCAACGUUUCGAGUUUCAUCCAU -......((((((((.((((..(-((((.(.(((.(......).))).)))))).......(((((.((((...))))....)))))..............))))))))))))...... ( -33.40, z-score = -1.10, R) >consensus _GUCCCAGAGACCCAGAGACAAU_GGAAAGUCGCGGAAUUAGCGCUGCGUUCCACAAUGAAAACAGAGCGCAAAACGGGAAGCUGUUCCACUAAUUGCAGCGUUUCGGGUUUCAUCCAU .......(((((((.(((((....((....))(((.((((((...(((((((.............))))))).(((((....)))))...)))))).).))))))))))))))...... (-28.52 = -28.89 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:58 2011