| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,722,612 – 9,722,718 |
| Length | 106 |
| Max. P | 0.510462 |
| Location | 9,722,612 – 9,722,718 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 71.80 |
| Shannon entropy | 0.50672 |
| G+C content | 0.49931 |
| Mean single sequence MFE | -18.08 |
| Consensus MFE | -12.58 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9722612 106 + 22422827 GCACGCUGAUGUCCCGAUGUCUC---GAUGUCCUGAUAUGCUCAUGUCCCUCACACAUGUCGUGCUUGCAUACAUAUAUAU--CCUUUCGCUUACAACUACAACUACAAAU ((((((..(((((..(((((...---.)))))..))))))).(((((.......)))))..))))................--............................ ( -15.20, z-score = 0.30, R) >droSec1.super_15 478600 103 + 1954846 GCACGCUGAUGUCCCGAUGUCUC---GAUGUCCUGAUAUGCUCGUGUCCCUCACACAUGUCGUGCUUACAUUCAUAUAU----CCUUUCGCUUACAACUACAACUACAAU- ((((...((((((..(....)..---))))))..((((((...(((.....))).))))))))))..............----...........................- ( -16.60, z-score = -0.44, R) >droYak2.chrX 18315247 102 + 21770863 GCACGCUGAUGUCCCGAUGUCU----GAUGUCCUGAUAUGCUCGUGUCCCUCACACAUGCCGUGCAUACAUACUUAUAU----CCUUUCUCUUACAACUACAACAACGAC- (((((...(((((..(((((..----.)))))..)))))((..((((.....))))..)))))))..............----...........................- ( -16.00, z-score = -0.27, R) >droEre2.scaffold_4690 13352094 107 - 18748788 GCACGCCGAUGUCCCGAUGACCC---GAUGUCCUGAUAUCCUCGUGUCCCUCACACACGUCGUGCUUACAUACAUGUAUAUGUGCCUUUGCCUACAACUACAACUACCAC- ((((((((((((...........---(((((....)))))...((((.....)))))))))).)).((((....))))...)))).........................- ( -21.30, z-score = -1.21, R) >droPer1.super_15 234792 98 - 2181545 ----GCUGAUGUUUUGGUGUCUCCCUGAUAUCCUGAUAUCCCCA--CCAACGACACAUGGCGUGUGUGCAGCCCCCCUCCGUCCCGUCCCCCGCCAUCUGCCAG------- ----...((((((..((((((.....))))))..))))))....--.....(.((.((((((.(..((..((........))..))..)..)))))).)).)..------- ( -21.30, z-score = -0.97, R) >consensus GCACGCUGAUGUCCCGAUGUCUC___GAUGUCCUGAUAUGCUCGUGUCCCUCACACAUGUCGUGCUUACAUACAUAUAU____CCUUUCGCUUACAACUACAACUACAAC_ (((((...(((((..((((((.....))))))..)))))...(((((.......))))).))))).............................................. (-12.58 = -13.30 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:33 2011