| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,707,063 – 9,707,154 |
| Length | 91 |
| Max. P | 0.760354 |
| Location | 9,707,063 – 9,707,154 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 75.60 |
| Shannon entropy | 0.38550 |
| G+C content | 0.45932 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -14.70 |
| Energy contribution | -16.22 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9707063 91 + 22422827 GUUUGCACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUUUUUUCGGGCGACAGGGCCAUCUUCUUCAUUUGCAU ...((((........(((....))).((((..(((((..(((((((((....)))))))))..)))))..))))............)))). ( -30.10, z-score = -3.33, R) >droSim1.chrX 7738281 87 + 17042790 GUUUGCACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUUUCU-CGGGCGACAGGGCCAUCUU---CAUUUGCAU ...((((........(((....))).((((..(((((..(((.(((((....)))))))-)..)))))..)))).....---....)))). ( -28.40, z-score = -2.77, R) >droSec1.super_15 463553 87 + 1954846 GUUUGCACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUUUCU-CGGGCGACAGGGCCAUCUU---CAUUUGCAU ...((((........(((....))).((((..(((((..(((.(((((....)))))))-)..)))))..)))).....---....)))). ( -28.40, z-score = -2.77, R) >droYak2.chrX 18302057 69 + 21770863 GUUUGCACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGUGGGC-AUCUUCAUUUGCAU--------------------- .................((((.....))))....((((((((((..((....)).-.)))))..))))).--------------------- ( -13.40, z-score = 0.38, R) >droEre2.scaffold_4690 13336724 69 - 18748788 GUUUGCACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAA-AGGAAAUCAGAGGGCCAUCUUCAUUUGCAU--------------------- .................((((.....))))....(((((-(.((....(((......))))).)))))).--------------------- ( -12.20, z-score = 0.65, R) >consensus GUUUGCACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUUUUUUCGGGCGACAGGGCCAUCUU___CAUUUGCAU .................((((.....))))..(((((..(((((((((....)))))))))..)))))....................... (-14.70 = -16.22 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:30 2011