| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,693,013 – 9,693,069 |
| Length | 56 |
| Max. P | 0.960858 |
| Location | 9,693,013 – 9,693,069 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 60.92 |
| Shannon entropy | 0.55029 |
| G+C content | 0.46207 |
| Mean single sequence MFE | -15.13 |
| Consensus MFE | -9.44 |
| Energy contribution | -8.57 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.960858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9693013 56 - 22422827 CCAUCAAUCCCA---GCCCAAGUAUAGGCUUCUCUUUAAGGGAAGGGGAGUGACGUAUU ...(((.((((.---(((........)))(((((.....))))).)))).)))...... ( -16.10, z-score = -1.21, R) >droSim1.chr3h_random 1334549 56 + 1452968 GCGUCAAGCCCA---UUACAAGCAUAAGCUUCCUUUUAAGGGGAGGGAAGUAGCAAAUA ((.....((...---......))....((((((((((....)))))))))).))..... ( -13.50, z-score = -1.12, R) >droVir3.scaffold_13045 2046011 59 + 2268007 UCAUAUACCCUACACGCGUGAGGACACGCUUUGUUUUUAGUGGGGAGGAGUGACAUAUU ((((...((((((..(((((....)))))..((....))))))))....))))...... ( -15.80, z-score = -1.89, R) >consensus CCAUCAACCCCA___GCACAAGCAUAAGCUUCCUUUUAAGGGGAGGGGAGUGACAUAUU ...........................((((((((((....))))))))))........ ( -9.44 = -8.57 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:29 2011