| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,677,118 – 9,677,208 |
| Length | 90 |
| Max. P | 0.821813 |
| Location | 9,677,118 – 9,677,208 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 82.99 |
| Shannon entropy | 0.26742 |
| G+C content | 0.47198 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -16.64 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821813 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 9677118 90 + 22422827 -UAGCCA-AAGAGUGGGCGUGGCAGUUGGAGUUGCGGUGGAAAUGGAGAAAUCCAAUUGCCCCGGCCUUGUAGUUAAUUAAAGUGUAAUGUC -((((..-(((.((.((...((((((((((....(.((....)).).....)))))))))))).)))))...))))................ ( -26.70, z-score = -2.17, R) >droSim1.chrX_random 2773198 85 + 5698898 -UAGCCA-AGGAGUGGGCGUGGCAGUUGGAGUUGGAGU-----UGGAGAAAUCCAAUUGCCCCGGCUGUGUAGUUAAUUAAAGUGUAAUGUC -..(((.-.......)))...((((((((....(((((-----((((....))))))).))))))))))....................... ( -25.90, z-score = -2.74, R) >droSec1.super_15 440861 90 + 1954846 -UAGCCA-AGGAGUGGGCGUGGCAGUUGGAGUUGCGGUGGAAAUGGAGAAAUCUAAUUGCCCCGGCUUGGUAGUUAAUUAAUGUGUAAUGUC -..((((-((..(.(((((..((.......))..)........((((....))))...)))))..))))))..................... ( -25.60, z-score = -1.78, R) >droYak2.chrX 18278599 80 + 21770863 CGGGCCAGAAAAGUGGGCGUGGCAGUUGAAAU------------GGAGAAAUCCAAUUGCACUGGCUGUGUAGUUAAUUAAAGUGUAAUGUC ((.(((.........))).))(((.((.....------------(((....)))((((((((.....)))))))).....)).)))...... ( -20.30, z-score = -1.82, R) >consensus _UAGCCA_AAGAGUGGGCGUGGCAGUUGGAGUUGCGGU_____UGGAGAAAUCCAAUUGCCCCGGCUGUGUAGUUAAUUAAAGUGUAAUGUC ..............((.((.((((((((((.....................)))))))))).)).))......................... (-16.64 = -16.57 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:24 2011