| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,670,068 – 9,670,199 |
| Length | 131 |
| Max. P | 0.808344 |
| Location | 9,670,068 – 9,670,199 |
|---|---|
| Length | 131 |
| Sequences | 5 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 71.62 |
| Shannon entropy | 0.51372 |
| G+C content | 0.47222 |
| Mean single sequence MFE | -39.32 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9670068 131 + 22422827 AUAAGUCUUGCAGCAGUUGCAAUUUGCAUGACGGUCGCGGUUAUUAGGGAGGAUGCACUUGACGUUGCCUCCGAUAUGGAUAUGGAUGUGAAUAUGGCUACCACAAGUUAGUUAAGAUCGUUAUGCA-AAUG ........(((((...)))))(((((((((((((((...........(((((..((.......))..)))))......................((((((.(....).)))))).))))))))))))-))). ( -36.10, z-score = -0.56, R) >droSim1.chrX 7717603 131 + 17042790 AUAAGUCUUGCAGCAGUUGCAAUUUGCAUGACGGUCGCGGCUAUUAGGGAGGAUGCACUUGACGUUGCCUCCGAUAUGGAUAUGGAUGUGAAUAUGGAUACCCCCAGUUAGUUAAGAUCGUUAUGCA-AAUG ........(((((...)))))(((((((((((((((..(((((...(((.((((.((.((.(((((...(((.....)))....))))).))..)).)).)))))...)))))..))))))))))))-))). ( -43.10, z-score = -2.33, R) >droSec1.super_15 434028 131 + 1954846 AUAAGUCUUGCAGCAGUUGCAAUUUGCAUGACGGUCGCGGCUAUUAGGGAGGAUGCACUUGACGUUGCCUCCGAUAUGGAUAUGGAUGUGAAUAUGGAUACCCCCAGUUAGUUAAGAUCGUUAUGCA-AAUG ........(((((...)))))(((((((((((((((..(((((...(((.((((.((.((.(((((...(((.....)))....))))).))..)).)).)))))...)))))..))))))))))))-))). ( -43.10, z-score = -2.33, R) >droEre2.scaffold_4690 13306320 119 - 18748788 AUAAGACUUGCAGCAGUUGCAAUUUGCAUGACGGUCGCGGUUAUUAGGGAGGAUGCACUUGACGAUGAAUCCGAUAUGGAUAUGAA------------UACCCCCAGAUAGUUAAGAUCGUUAUGCA-AAUG ........(((((...)))))(((((((((((((((..(..((((.(((.((.....(........).((((.....)))).....------------..))))).))))..)..))))))))))))-))). ( -35.70, z-score = -2.76, R) >droAna3.scaffold_13248 1512355 119 + 4840945 -----AUCUACGCUCGAUGGGG--CGAAAGGGGGGGGCGGGUGC-AGCGGGGGCA-ACCUGCCACAAUUUGCAUGACGGCCAUUAGGGUGGGCCU---UAACAC-AGCCAACGGAGAUCGUUUCGGGUAAUU -----......((((((...((--(.....(..(((((..((((-((((((....-.))))).......)))))..(.(((.....))).)))))---)..)..-.)))((((.....)))))))))).... ( -38.61, z-score = 0.19, R) >consensus AUAAGUCUUGCAGCAGUUGCAAUUUGCAUGACGGUCGCGGCUAUUAGGGAGGAUGCACUUGACGUUGCCUCCGAUAUGGAUAUGGAUGUGAAUAUGG_UACCCCCAGUUAGUUAAGAUCGUUAUGCA_AAUG .......(((((.....)))))..((((((((((((..(((((((.(((.(((.(((........))).))).............(((....)))......))).)).)))))..))))))))))))..... (-19.76 = -20.14 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:24 2011