| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,661,588 – 9,661,672 |
| Length | 84 |
| Max. P | 0.740631 |
| Location | 9,661,588 – 9,661,672 |
|---|---|
| Length | 84 |
| Sequences | 3 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 99.21 |
| Shannon entropy | 0.01093 |
| G+C content | 0.55159 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -23.60 |
| Energy contribution | -23.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.545808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9661588 84 + 22422827 CAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGACAAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUA ....((.(((((((.......)).)))))))..........((.....))((((.((..(((......)))..)).)))).... ( -23.60, z-score = -1.06, R) >droSim1.chrX 7709236 84 + 17042790 CAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGACAAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUA ....((.(((((((.......)).)))))))..........((.....))((((.((..(((......)))..)).)))).... ( -23.60, z-score = -1.06, R) >droSec1.super_15 423871 84 + 1954846 CAAAGGGCCGGGCCAUUAACAGGACCUGGCCAAAGGACAAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUA .....(((((((((.......)).)))))))..........((.....))((((.((..(((......)))..)).)))).... ( -27.20, z-score = -1.65, R) >consensus CAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGACAAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUA ....((.(((((((.......)).)))))))..........((.....))((((.((..(((......)))..)).)))).... (-23.60 = -23.60 + -0.00)
| Location | 9,661,588 – 9,661,672 |
|---|---|
| Length | 84 |
| Sequences | 3 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 99.21 |
| Shannon entropy | 0.01093 |
| G+C content | 0.55159 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -23.52 |
| Energy contribution | -23.30 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.05 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9661588 84 - 22422827 UAUUCGACUCUCUGCAUCUCGCUGCCCAGCAUCGGGAAUGUCCUUUGUCCUUUGGCCAGGUCCUGUUAAUGGCCCGGUCCUUUG .....(((.....((((((((.(((...))).)))).)))).....)))....((((.((((........)))).))))..... ( -22.40, z-score = -0.83, R) >droSim1.chrX 7709236 84 - 17042790 UAUUCGACUCUCUGCAUCUCGCUGCCCAGCAUCGGGAAUGUCCUUUGUCCUUUGGCCAGGUCCUGUUAAUGGCCCGGUCCUUUG .....(((.....((((((((.(((...))).)))).)))).....)))....((((.((((........)))).))))..... ( -22.40, z-score = -0.83, R) >droSec1.super_15 423871 84 - 1954846 UAUUCGACUCUCUGCAUCUCGCUGCCCAGCAUCGGGAAUGUCCUUUGUCCUUUGGCCAGGUCCUGUUAAUGGCCCGGCCCUUUG .....(((.....((((((((.(((...))).)))).)))).....)))....((((.((((........)))).))))..... ( -25.10, z-score = -1.51, R) >consensus UAUUCGACUCUCUGCAUCUCGCUGCCCAGCAUCGGGAAUGUCCUUUGUCCUUUGGCCAGGUCCUGUUAAUGGCCCGGUCCUUUG .....(((.....((((((((.(((...))).)))).)))).....)))....((((.((((........)))).))))..... (-23.52 = -23.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:23 2011