| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,635,180 – 9,635,277 |
| Length | 97 |
| Max. P | 0.949170 |
| Location | 9,635,180 – 9,635,277 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 85.34 |
| Shannon entropy | 0.26826 |
| G+C content | 0.29325 |
| Mean single sequence MFE | -16.00 |
| Consensus MFE | -14.19 |
| Energy contribution | -14.71 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9635180 97 + 22422827 -CUAGAAAAAAAAAACGAAAUAAACUAAAAUGCCUAGGAGAGAAUGCCAAAUGUUUGUAAACAUUAUUUAAAUAACUUUGGGCGUUUUGAUUGAUUAU -........................(((((((((((((........)).((((((....)))))).............)))))))))))......... ( -15.90, z-score = -2.04, R) >droSim1.chrX 7681976 93 + 17042790 -----CUAGAAAAAACGAAACAAACCAAAAUGCCUAGGAGAGAAUGCCAAAUGUUUGUAAACAUUAUUUAAAUAACUUUGGGCGUUUUGAUUGAUUAU -----...............(((..(((((((((((((........)).((((((....)))))).............))))))))))).)))..... ( -18.20, z-score = -2.40, R) >droSec1.super_15 397487 93 + 1954846 -----CUAGAAAAAACGAAACAAACCAAAAUGCCUAGGAGAGAAUGCCAAAUGUUUGUAAACAUUAUUUAAAUAACUUUGGGCGUUUUGAUUGAUUAU -----...............(((..(((((((((((((........)).((((((....)))))).............))))))))))).)))..... ( -18.20, z-score = -2.40, R) >droYak2.chrX 18232396 98 + 21770863 CUAGAUAAAAACAAGAGAAAAAGCAAAAAAUGCCUAGCAGAGAAUGCGAAAUGUUUGUAAACAUUAUUUAAAUAACUUUGGGCGAUUUGAUUGAUUAU .......................(((.((((((((((((.....)))..((((((....)))))).............))))).))))..)))..... ( -14.00, z-score = -0.74, R) >droEre2.scaffold_4690 13270082 87 - 18748788 -----------CUAGAAAAAGAAACCGAAAUGCCUAGGAGAGAAUGCCAAAUGUUUGUAAACAUUAUUUAAAUAACUUUGGGCGAUUUGAUUGAUUAU -----------..............((((.((((((((........)).((((((....)))))).............)))))).))))......... ( -13.70, z-score = -1.28, R) >consensus _____CAAAAAAAAACGAAACAAACCAAAAUGCCUAGGAGAGAAUGCCAAAUGUUUGUAAACAUUAUUUAAAUAACUUUGGGCGUUUUGAUUGAUUAU .........................(((((((((((((...........((((((....))))))...........)))))))))))))......... (-14.19 = -14.71 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:20 2011