| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,621,411 – 9,621,501 |
| Length | 90 |
| Max. P | 0.809078 |
| Location | 9,621,411 – 9,621,501 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 76.78 |
| Shannon entropy | 0.40068 |
| G+C content | 0.55685 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -18.15 |
| Energy contribution | -18.75 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9621411 90 - 22422827 CGCCGAGGGUGGUCUGCCACGCAUUUUCCCGCCGCUUUUCCCCCCACUUUACCAUAUGAGUGGGUGGUUACCUAUCGGCAUUGUUGCCUU .((((((.((((....)))).)..................(((((((((........))))))).)).......)))))........... ( -30.50, z-score = -1.72, R) >droEre2.scaffold_4690 13253089 77 + 18748788 CAACCAGGGUGGUCUGUCACGCAUUUUCCCCCCACUUUU-------------CAUUUGAGUGGGUGGUUACCUCUCAGCAUUGUUGCCUU .((((((.((((....)))).)........(((((((..-------------.....))))))))))))........(((....)))... ( -21.20, z-score = -0.89, R) >droSec1.super_15 384053 90 - 1954846 CGACGAGGGUGGUCUGCCACGCAAUUUCCCGCCGCUUUUCCCCCCAUUUUACCAUUUGAGUGGGUGGUUACCUCUCGCCAUUGUUGUCAU .(((((.((((((..((...((........)).)).....(((((((((........))))))).)).........)))))).))))).. ( -26.90, z-score = -1.39, R) >droSim1.chrX 7668469 90 - 17042790 CGCCGAGGGUGGGCUGCCACGCAUUUUCCCGCCGCUUUUUCCCCCAUUUUACCAUUUGAGUGGGUGGUUACCUCUCGGCAUUGUUGCCAU .((((((((((((.(((...)))....)))))).......(((((((((........))))))).))......))))))........... ( -34.40, z-score = -2.40, R) >dp4.chrXL_group3a 847445 75 - 2690836 UGGAGAGGGUGGUCUGCCACACAGGCCCCCCUCCCACA--------------GAUAUG-GUGGGUGGUUACCUCUCGGCAUUGUUGCCUU ..((((((..((((((.....))))))..((.(((((.--------------......-))))).))...))))))((((....)))).. ( -35.70, z-score = -2.14, R) >consensus CGACGAGGGUGGUCUGCCACGCAUUUUCCCGCCGCUUUU_CCCCCA_UUUACCAUUUGAGUGGGUGGUUACCUCUCGGCAUUGUUGCCUU ....((((((((....)))).......(((.((((((....................))))))).))...))))..((((....)))).. (-18.15 = -18.75 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:19 2011