| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,607,921 – 9,608,014 |
| Length | 93 |
| Max. P | 0.869576 |
| Location | 9,607,921 – 9,608,014 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.09 |
| Shannon entropy | 0.32853 |
| G+C content | 0.37759 |
| Mean single sequence MFE | -16.45 |
| Consensus MFE | -14.15 |
| Energy contribution | -14.35 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9607921 93 + 22422827 ----------CAAGAAGAUG----GG-GAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACCAAAAA------- ----------........((----((-.......).........((((.((((...((((((...))))))))))(((((....))))).)))).......)))....------- ( -17.00, z-score = -1.66, R) >droSim1.chrX 7656008 97 + 17042790 ----------CAAGAAGAUG----GG-GAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACCAAAAAAAAA--- ----------........((----((-.......).........((((.((((...((((((...))))))))))(((((....))))).)))).......)))........--- ( -17.00, z-score = -1.79, R) >droSec1.super_15 371635 100 + 1954846 ----------CAAGAAGACG----GG-GAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACCAAAAAAAAAAAA ----------.........(----((-.......).........((((.((((...((((((...))))))))))(((((....))))).)))).......))............ ( -16.30, z-score = -1.64, R) >droYak2.chrX 18203855 100 + 21770863 -------GGCCCAGAAGAUG----GG-GAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACCAAAAAAAAA--- -------((((((.....))----))-.................((((.((((...((((((...))))))))))(((((....))))).)))).......)).........--- ( -22.60, z-score = -2.78, R) >droEre2.scaffold_4690 13239913 93 - 18748788 ----------CAAGCAGAUG----GGAGAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACCAAAA-------- ----------........((----(..(......).........((((.((((...((((((...))))))))))(((((....))))).)))).......)))...-------- ( -16.40, z-score = -1.29, R) >droAna3.scaffold_13248 1431046 93 + 4840945 ---------CCGAGAAUAUG----AG-GAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACAACAA-------- ---------((.........----.)-)................((((.((((...((((((...))))))))))(((((....))))).)))).............-------- ( -15.70, z-score = -1.36, R) >dp4.chrXL_group3a 833805 94 + 2690836 -------------GAAGAAG-----GGGAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAAAAGAGGAAAAA--- -------------.......-----...................((((.((((...((((((...))))))))))(((((....))))).))))..................--- ( -15.60, z-score = -1.29, R) >droPer1.super_15 118560 94 - 2181545 -------------GAAGAAG-----GGGAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAAAAGAGGAGAAA--- -------------.......-----...................((((.((((...((((((...))))))))))(((((....))))).))))..................--- ( -15.60, z-score = -1.10, R) >droWil1.scaffold_181096 3370181 101 + 12416693 ---------CCAAGAAAGAA--AGAAGACACAGACUCCAAAAUGGCCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACAACAAAACAA--- ---------...........--.....................((((..((((...((((((...))))))))))(((((....)))))).)))..................--- ( -13.10, z-score = -0.46, R) >droGri2.scaffold_15203 104149 115 - 11997470 CCAAAAUGGCCAGAAAAACGCAGAGGGGAAAAGACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCACCUACAAACCAUAUAAAAAAAAA .....((((.........(.....)(((...((((............(((....)))(((((...))))))))).(((((....)))))...))).....))))........... ( -15.20, z-score = -0.02, R) >consensus __________CAAGAAGAUG____GG_GAAAAUACAACAAAAAUGGCGAUAGAAAUCGUGAUACAAUCACGUCUAGACUUUUACGAGUUGCGCCUACAAAACAAAAAAAAAA___ ............................................((((.((((...((((((...))))))))))(((((....))))).))))..................... (-14.15 = -14.35 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:15 2011