| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,594,982 – 9,595,044 |
| Length | 62 |
| Max. P | 0.656425 |
| Location | 9,594,982 – 9,595,044 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 72.96 |
| Shannon entropy | 0.50679 |
| G+C content | 0.38564 |
| Mean single sequence MFE | -16.82 |
| Consensus MFE | -4.79 |
| Energy contribution | -4.93 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9594982 62 - 22422827 UGAAUUCAACGCUGCUCAUCAGGUACUUGAUGGGUGGUAAUUAAUUGAUAUUCAAAUGUGGC (((((((((.((..((((((((....))))))))..))......)))).)))))........ ( -17.50, z-score = -2.93, R) >droSim1.chrX 7644658 62 - 17042790 UGAAUUCAACGCUGCUCAUCAGGUACUUGAUGGGUGGUAUUCAAUUGAUAUUCAAAUGUGGU (((((((((.((..((((((((....))))))))..))......)))).)))))........ ( -17.50, z-score = -2.51, R) >droSec1.super_15 358074 62 - 1954846 UGAAUUCAACGCUGCUCAUCAGGUACUUGAUGGGUGGUAUUCAAUUGAUAUUCAAAUGUGGU (((((((((.((..((((((((....))))))))..))......)))).)))))........ ( -17.50, z-score = -2.51, R) >droYak2.chrX 18190916 59 - 21770863 UGGACUCAACGCUAUUCAUCAGGUUCUUGAUG---GGUAAACAUUUGAUAGUCAAAUGUGUU ............((((((((((....))))))---)))).(((((((.....)))))))... ( -15.20, z-score = -2.22, R) >droEre2.scaffold_4690 13225964 59 + 18748788 UGGAUUCCACGCUAUUCAUCAGGUUCUUGAUG---GGUAAGCAUUUGAUAUUCAAAUGUGGU ......((((((((((((((((....))))))---))).)))(((((.....))))))))). ( -19.60, z-score = -3.46, R) >droGri2.scaffold_15203 87551 59 + 11997470 CAAAACCACAACACAUUUAUACAUACUGUGUA---UGUAAGCGAUUCCUGUUCGAUUGUGGC .....((((((........(((((((...)))---))))..(((.......))).)))))). ( -13.60, z-score = -1.68, R) >consensus UGAAUUCAACGCUGCUCAUCAGGUACUUGAUG___GGUAAUCAAUUGAUAUUCAAAUGUGGU ..........(((...((((((....))))))...)))........................ ( -4.79 = -4.93 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:14 2011