| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,592,546 – 9,592,618 |
| Length | 72 |
| Max. P | 0.854493 |
| Location | 9,592,546 – 9,592,618 |
|---|---|
| Length | 72 |
| Sequences | 9 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 89.88 |
| Shannon entropy | 0.19637 |
| G+C content | 0.42189 |
| Mean single sequence MFE | -19.59 |
| Consensus MFE | -15.72 |
| Energy contribution | -15.28 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9592546 72 + 22422827 GCCAAUAUAAAAUAUUGAUUUAUGCU--------GCCCAGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......(((--------((((.....)))))(((.((((((....)))))).))))))).... ( -18.00, z-score = -1.86, R) >droWil1.scaffold_181096 9015867 66 - 12416693 GCCAAUAUAAAAUAUUGAUUUAUGUU-------GGCU-------GGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG (((((((((((.......))))))))-------)))(-------(((.(((.((((((....)))))).)))..)))).. ( -24.60, z-score = -5.19, R) >droPer1.super_15 103135 80 - 2181545 GCCAAUAUAAAAUAUUGAUUUAUGCCUCUUGGGGGCUUUCCUGGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ..((((((...))))))......((((.....)))).....(((.((.(((.((((((....)))))).))))).))).. ( -21.90, z-score = -1.05, R) >dp4.chrXL_group3a 819046 80 + 2690836 GCCAAUAUAAAAUAUUGAUUUAUGCCUCUUGGGGGCUUUCCUGGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ..((((((...))))))......((((.....)))).....(((.((.(((.((((((....)))))).))))).))).. ( -21.90, z-score = -1.05, R) >droAna3.scaffold_13248 1410501 72 + 4840945 GCCAAUAUAAAAUAUUGAUUUAUGCU--------GCCCUGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......(((--------((((.....)))))(((.((((((....)))))).))))))).... ( -17.90, z-score = -1.62, R) >droEre2.scaffold_4690 13223618 72 - 18748788 GCCAAUAUAAAAUAUUGAUUUAUGCU--------GCCCAGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......(((--------((((.....)))))(((.((((((....)))))).))))))).... ( -18.00, z-score = -1.86, R) >droYak2.chrX 18188508 72 + 21770863 GCCAAUAUAAAAUAUUGAUUUAUGCU--------GCCCAGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......(((--------((((.....)))))(((.((((((....)))))).))))))).... ( -18.00, z-score = -1.86, R) >droSec1.super_15 355710 72 + 1954846 GCCAAUAUAAAAUAUUGAUUUAUGCU--------GCCCAGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......(((--------((((.....)))))(((.((((((....)))))).))))))).... ( -18.00, z-score = -1.86, R) >droSim1.chrX 7641495 72 + 17042790 GCCAAUAUAAAAUAUUGAUUUAUGCU--------GCCCAGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......(((--------((((.....)))))(((.((((((....)))))).))))))).... ( -18.00, z-score = -1.86, R) >consensus GCCAAUAUAAAAUAUUGAUUUAUGCU________GCCCAGCCCGGGCAUCAAUCAAUUUUCAAGUUGAGUGAGCGCCAAG ((((((((...))))))......((.........((((.....)))).(((.((((((....)))))).))))))).... (-15.72 = -15.28 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:13 2011