| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,584,267 – 9,584,336 |
| Length | 69 |
| Max. P | 0.707458 |
| Location | 9,584,267 – 9,584,336 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 64.03 |
| Shannon entropy | 0.59310 |
| G+C content | 0.41665 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -7.18 |
| Energy contribution | -7.67 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9584267 69 - 22422827 GCUAACUAUCUAUGACUUCUGCACAAUCGUAGAUUUUGGCAGAAGUUGAACUGGCUUUUGU-UUUCUGGG ((((....((...(((((((((.(((.........))))))))))))))..))))......-........ ( -15.70, z-score = -1.41, R) >droSec1.super_15 347643 66 - 1954846 GCUAACUAUCUAUGACUUCUGCA---UCGCAGACUUUGGCAGAAGUUGAACUGGCUUUUGU-UUUAUGGC .........((((((..(((((.---..)))))....((((((((((.....)))))))))-))))))). ( -15.00, z-score = -1.00, R) >droEre2.scaffold_4690 13215109 69 + 18748788 GCUAACUAUCUUUGACUUCGGCACAAUCGCUGACUUUGGCAUAAGCUGAACUGGGUUUUCUAUAUAUGA- (..((((..........(((((......))))).((..((....))..))...))))..).........- ( -10.70, z-score = -0.34, R) >dp4.chrXL_group3a 810178 65 - 2690836 AGUCAAAGUCUAAUCCGUCUGAUCUGUCUCAGAAAUGAACCAGA----AAGUGCCGCUCAU-UAAAUGGC ......................((((..(((....)))..))))----....((((.....-....)))) ( -10.30, z-score = -0.37, R) >consensus GCUAACUAUCUAUGACUUCUGCACAAUCGCAGACUUUGGCAGAAGUUGAACUGGCUUUUGU_UAUAUGGC .................(((((......))))).....(((((((((.....)))))))))......... ( -7.18 = -7.67 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:12 2011