| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,584,067 – 9,584,158 |
| Length | 91 |
| Max. P | 0.701132 |
| Location | 9,584,067 – 9,584,158 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 69.49 |
| Shannon entropy | 0.52816 |
| G+C content | 0.44544 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -11.87 |
| Energy contribution | -12.40 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9584067 91 - 22422827 UCGUUUUUGCUGGAUUUUUGCUGGCAUUAUCCACGAGAUGCAACAGAUGGUGAAGGAAUUCAUCUG---AGCAGAUCCACGAAACGCCCCCGAU------- .((((((.(.((((((..((((.(((((........)))))..(((((((.........)))))))---)))))))))))))))))........------- ( -26.30, z-score = -1.60, R) >droEre2.scaffold_4690 13214948 78 + 18748788 ------------UCCUUUUGCUGGCAUUAUCCACUAGAUGCAACAGAUGGUGAAGGAUUUCAUCUG---AGCAGAUCCACGAAACGCCCCCAU-------- ------------....((((((.(((((........)))))..(((((((.........)))))))---))))))..................-------- ( -17.90, z-score = -0.78, R) >droYak2.chrX 18179123 80 - 21770863 ------------UAGUUUUGCUGGCAUCAUCCACAAGAUGCAACAGAUGGUGAAGAAAUUCAUCUG---AGCAGAUCCACGUAACGCCCCCCGUU------ ------------....((((((.(((((........)))))..(((((((.........)))))))---)))))).......((((.....))))------ ( -20.30, z-score = -1.84, R) >droSec1.super_15 347463 79 - 1954846 ------------UCUUUUUGCUGGCAUUAUCCACGAGAUGCAACAGAUGGUGAAGAAAUUCAUCUG---AGCAGAUCCACGAAACGCCCCCGAU------- ------------....((((((.(((((........)))))..(((((((.........)))))))---))))))...................------- ( -17.90, z-score = -0.98, R) >droSim1.chrX 7633927 79 - 17042790 ------------UCUUUUUGCUGGCAUUAUCCACGAGAUGCAACAGAUGGUGAAGAAAUUCAUCUG---AGCAUAUCCACGAAACGCCCCCGAU------- ------------.....(((..(((.((.((...((.((((..(((((((.........)))))))---.)))).))...)))).)))..))).------- ( -16.60, z-score = -0.74, R) >droWil1.scaffold_181096 3415039 101 - 12416693 UUGUUUCUAUUUGCUUUUUGCUGAAAAGUGUGCCCAAUGGGAUCAAAUUAUAAACAAAUCAAUCUGAUCAACAGGUUCUACAUAUAUCAACGAACAUCUGU ((((((..(((((......(((....)))...(((...)))..)))))...)))))).............((((((((.............))))..)))) ( -13.22, z-score = 0.89, R) >consensus ____________UCUUUUUGCUGGCAUUAUCCACGAGAUGCAACAGAUGGUGAAGAAAUUCAUCUG___AGCAGAUCCACGAAACGCCCCCGAU_______ ................((((((.(((((........)))))..(((((((.........)))))))...)))))).......................... (-11.87 = -12.40 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:11 2011