| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,583,851 – 9,583,947 |
| Length | 96 |
| Max. P | 0.621574 |
| Location | 9,583,851 – 9,583,947 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 88.84 |
| Shannon entropy | 0.18360 |
| G+C content | 0.47623 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9583851 96 - 22422827 GCGCACUUGUAGUCAUCUCUCGGGAUCUCGAGAUCUCUGGACGACUUCCACUGAAUUCUCUAAUCAAGCGGCAAUGAUGCAAAAAAAAAAAACACA ..(((.(..(.(((...((((((....))))))((..((((.....))))..))...............))).)..))))................ ( -18.60, z-score = -0.58, R) >droEre2.scaffold_4690 13214702 84 + 18748788 GCGCACUUGUAGCCAUCUCUCGGCAUCUCGGGCACCCUG---CACUUCCACUGAAUUCUCUAAUCAAGCGGCAACGAUGCAAAAAAA--------- ..(((.((((.(((.......((.....((((...))))---.....))..(((.........)))...))).))))))).......--------- ( -15.40, z-score = 0.38, R) >droYak2.chrX 18178920 82 - 21770863 GCGCACUUGUAGCCAUCUCUCGGGAUCUC-AGAUCCCUG---GACUUCCACUGAAUUCUCUAAUCAAGCGGCAACGAUGCAAAAAA---------- ..(((.((((.(((.......((((((..-.))))))((---(....)))...................))).)))))))......---------- ( -23.00, z-score = -2.58, R) >droSec1.super_15 347253 90 - 1954846 GCGCACUUGUAGCCAUCUCUCGGGAUCUCGAGAUCUCUGGACGACUUCCACUGAAUUCUCUAAUCAAGCGGCAACGAUGCAAAAAAAAAA------ ..(((.((((.(((...((((((....))))))((..((((.....))))..))...............))).)))))))..........------ ( -23.70, z-score = -2.29, R) >droSim1.chrX 7633719 88 - 17042790 GCGCACUUGUAGCCAUCUCUCGGGAUCUCGAGAUCUCUGGACGACUUCCACUGAAUUCUCUAAUCAAGCGGCAACGAUGCAAAAAAAA-------- ..(((.((((.(((...((((((....))))))((..((((.....))))..))...............))).)))))))........-------- ( -23.70, z-score = -2.22, R) >consensus GCGCACUUGUAGCCAUCUCUCGGGAUCUCGAGAUCUCUGGACGACUUCCACUGAAUUCUCUAAUCAAGCGGCAACGAUGCAAAAAAAA________ ..(((.((((.(((.......((((((....)))))).....((.(((....))).))...........))).)))))))................ (-17.66 = -17.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:11 2011