| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,578,368 – 9,578,436 |
| Length | 68 |
| Max. P | 0.998256 |
| Location | 9,578,368 – 9,578,436 |
|---|---|
| Length | 68 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 90.67 |
| Shannon entropy | 0.16512 |
| G+C content | 0.49867 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -18.21 |
| Energy contribution | -18.49 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9578368 68 + 22422827 AAGACGGGG-CGAAAAGGG-AAGA--ACAACGAGAACAGUA-CCGAGAAUUCUCUCGGUCUCGUUGCACUCAU .....((((-(......(.-....--.)(((((((......-((((((....))))))))))))))).))).. ( -19.80, z-score = -1.55, R) >droSim1.chrX 7628450 70 + 17042790 AAAACGGGG-CGAAAAGGG-AAGAGUACAACGAGAACGGUA-CCGAGAAUUCUCUCGGUCUCGUUGCACUCAU .........-.........-..((((.((((((((......-((((((....)))))))))))))).)))).. ( -24.60, z-score = -3.04, R) >droSec1.super_15 342200 70 + 1954846 AAAACGGGG-CGAAAAGGG-AAGAGUACAACGAGAACGGUA-CCGAGAAUUCUCUCGGUCUCGUUGCACUCAU .........-.........-..((((.((((((((......-((((((....)))))))))))))).)))).. ( -24.60, z-score = -3.04, R) >droYak2.chrX 18169982 72 + 21770863 AAAACGGGGGCGAAAAGGG-AACAGAACAACGAGAACGGGAACCGAGAAUUCUCUCGGUCUCGCUGUACUCUU ..............(((((-.((((..(.....)..(((((.((((((....))))))))))))))).))))) ( -21.10, z-score = -1.29, R) >droEre2.scaffold_4690 13209205 73 - 18748788 AAAACGGGGACGAAAAGGGGAAGAGAACAACGAGAACGGGAAUCGAGAAUUCUCUCGGUCUUGUUGCACUCAU ....((....))..........(((..((((((((.(((((...........))))).))))))))..))).. ( -22.60, z-score = -2.73, R) >consensus AAAACGGGG_CGAAAAGGG_AAGAGAACAACGAGAACGGUA_CCGAGAAUUCUCUCGGUCUCGUUGCACUCAU ....((....))..........(((..((((((((.......((((((....))))))))))))))..))).. (-18.21 = -18.49 + 0.28)
| Location | 9,578,368 – 9,578,436 |
|---|---|
| Length | 68 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 90.67 |
| Shannon entropy | 0.16512 |
| G+C content | 0.49867 |
| Mean single sequence MFE | -22.56 |
| Consensus MFE | -19.79 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.75 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.30 |
| SVM RNA-class probability | 0.998256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9578368 68 - 22422827 AUGAGUGCAACGAGACCGAGAGAAUUCUCGG-UACUGUUCUCGUUGU--UCUU-CCCUUUUCG-CCCCGUCUU ..(((.((((((((((((((......)))))-......)))))))))--.)))-.........-......... ( -21.10, z-score = -2.84, R) >droSim1.chrX 7628450 70 - 17042790 AUGAGUGCAACGAGACCGAGAGAAUUCUCGG-UACCGUUCUCGUUGUACUCUU-CCCUUUUCG-CCCCGUUUU ..((((((((((((((((((......)))))-......)))))))))))))..-.........-......... ( -27.90, z-score = -5.55, R) >droSec1.super_15 342200 70 - 1954846 AUGAGUGCAACGAGACCGAGAGAAUUCUCGG-UACCGUUCUCGUUGUACUCUU-CCCUUUUCG-CCCCGUUUU ..((((((((((((((((((......)))))-......)))))))))))))..-.........-......... ( -27.90, z-score = -5.55, R) >droYak2.chrX 18169982 72 - 21770863 AAGAGUACAGCGAGACCGAGAGAAUUCUCGGUUCCCGUUCUCGUUGUUCUGUU-CCCUUUUCGCCCCCGUUUU ((.((.((((((((((((((......))))).......))))))))).)).))-................... ( -20.41, z-score = -2.67, R) >droEre2.scaffold_4690 13209205 73 + 18748788 AUGAGUGCAACAAGACCGAGAGAAUUCUCGAUUCCCGUUCUCGUUGUUCUCUUCCCCUUUUCGUCCCCGUUUU ..(((.(((((.(((.((.(.(((((...)))))))).))).))))).)))...................... ( -15.50, z-score = -2.12, R) >consensus AUGAGUGCAACGAGACCGAGAGAAUUCUCGG_UACCGUUCUCGUUGUACUCUU_CCCUUUUCG_CCCCGUUUU ..(((.((((((((((((((......))))).......))))))))).)))...................... (-19.79 = -20.27 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:10 2011