| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,576,106 – 9,576,206 |
| Length | 100 |
| Max. P | 0.532935 |
| Location | 9,576,106 – 9,576,206 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.07 |
| Shannon entropy | 0.32392 |
| G+C content | 0.64845 |
| Mean single sequence MFE | -47.33 |
| Consensus MFE | -29.75 |
| Energy contribution | -31.07 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9576106 100 - 22422827 CAACAAGCCGGCAGCCCAAGGA------CCCGGCUCUGGCACAGGCGGAGUCGGUGUUGGAGU------GAAUGUGGGUGUCGGCGGUGUUGUUGGCGUCGGCGUUGUGCCU (((((.(((((((.((((..((------((((((((((.(...).))))))))).))).....------.....)))))))))))..)))))..((((.((....)))))). ( -43.90, z-score = -1.07, R) >droSim1.chrX 7626088 100 - 17042790 CAACAAGCCGGCAGCCCAAGGA------CCCGGCUCUGGCACAGGCGGAGUCGGUGUUGGAGU------CAAUGUGGGUGUCGGCGGUGUUGUUGGCGUCGGCGUUGUGCCU (((((.(((((((.((((.(..------..)(((((..((((.(((...))).))))..))))------)....)))))))))))..)))))..((((.((....)))))). ( -46.60, z-score = -1.82, R) >droSec1.super_15 339853 100 - 1954846 CAACAAGCCGGCAGCCCAAGGA------CCCGGCUCUGGCACAGGCGGAGUCGGUGUUGGAGU------CAAUGUGGGUGUCGGCGGUGUUGUUGGCGUCAGCGUUGUGCCU (((((.(((((((.((((.(..------..)(((((..((((.(((...))).))))..))))------)....)))))))))))..)))))..((((.(......))))). ( -47.20, z-score = -2.25, R) >droYak2.chrX 18167362 100 - 21770863 CAACAAACCGGCAGCCCAAGGA------CCUGGCUCUGGCACUGGCGGAGUCGGUGUUGGAGU------CAAUGUGGCCGUCGGCGGUGUUGUCGGCGUCGGCGUUGUGCCU .........(((((((((....------..((((((..((((((((...))))))))..))))------)).)).)))((((((((.((....)).))))))))...)))). ( -46.50, z-score = -1.60, R) >droEre2.scaffold_4690 13206674 100 + 18748788 CAAUAAACCGGCAGCCCAAGGACCCGGUCCCGGCUCUGGCACUGGCGGAGUCGGUGUUGGAGU------CAAUGUGACCGUCGGCGGUGUU------GUCGGCGUUGUGCCU ((((...((((((((((...(((..(((((.(((((..((((((((...))))))))..))))------)...).)))))))...)).)))------))))).))))..... ( -44.40, z-score = -1.42, R) >droAna3.scaffold_13248 1385261 112 - 4840945 AAAUAAGCCACCUGCCCAGGGACCUGGACCCGGUUCUGGACCCGGCGGUGUUGGUGUCGGAGUCGUCGGCGGCGUUAAUGUUGGCGUCGUCGGCGGCGUCGGCGUUGUGCCU ......((((((((((..(((.((.((((...)))).)).)))))))).).))))((((..((((((((((((((((....))))))))))))))))..))))......... ( -55.40, z-score = -1.93, R) >consensus CAACAAGCCGGCAGCCCAAGGA______CCCGGCUCUGGCACAGGCGGAGUCGGUGUUGGAGU______CAAUGUGGGUGUCGGCGGUGUUGUUGGCGUCGGCGUUGUGCCU .........((((((((((.(........(((((((((.(...).)))))))))).)))).))......((((((.((((((((((....)))))))))).)))))))))). (-29.75 = -31.07 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:07 2011