| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,552,683 – 9,552,743 |
| Length | 60 |
| Max. P | 0.865240 |
| Location | 9,552,683 – 9,552,743 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 77.70 |
| Shannon entropy | 0.38830 |
| G+C content | 0.38220 |
| Mean single sequence MFE | -9.27 |
| Consensus MFE | -7.54 |
| Energy contribution | -5.77 |
| Covariance contribution | -1.77 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9552683 60 + 22422827 ----AUU--UCGGUAAACGUUUCGUUAAGCCUUUCUGUUAUUAAGGUUUUCCCG----UUGCAAGUCCUG- ----...--..((.....((..((..(((((((.........)))))))...))----..))....))..- ( -9.60, z-score = -1.52, R) >droSim1.chrX 7605851 60 + 17042790 ----AUU--UCGGUAAACGUUUCGUUAAGCCUUUCUGUUAUUAAGGUUUUCCCG----UUGCAAGUCCUG- ----...--..((.....((..((..(((((((.........)))))))...))----..))....))..- ( -9.60, z-score = -1.52, R) >droSec1.super_15 316260 60 + 1954846 ----AUU--UCGGUAAACGUUUCGUUAAGCCUUUUUGUUAUUAAGGUUUUCCCG----UUGCAAGUCCUG- ----...--..((.....((..((..(((((((.........)))))))...))----..))....))..- ( -9.60, z-score = -1.51, R) >droYak2.chrX 18143287 60 + 21770863 ----AUU--UCGGUAAACGUUUCGUUAAGCCUUUCUGUUAUUAAGGUUUUCCCG----UUGCAAGUCCUG- ----...--..((.....((..((..(((((((.........)))))))...))----..))....))..- ( -9.60, z-score = -1.52, R) >droEre2.scaffold_4690 13183099 60 - 18748788 ----AUU--UCGGUAAACGUUUCGUUAAGCCUUUCUGUUAUUAAGGUUUUCCCG----UUGCAAGUCCUG- ----...--..((.....((..((..(((((((.........)))))))...))----..))....))..- ( -9.60, z-score = -1.52, R) >droAna3.scaffold_13248 1353463 71 + 4840945 AUUAAUCAGUUGACUGGCACUUUGUUGAAACAAUUUAAUCAUUUGUUUAUUUCGCCACUUACGAAUUCUUG ........((.((.((((.(......)((((((.........)))))).....)))).))))......... ( -7.60, z-score = 0.02, R) >consensus ____AUU__UCGGUAAACGUUUCGUUAAGCCUUUCUGUUAUUAAGGUUUUCCCG____UUGCAAGUCCUG_ ..........(((..((((...))))(((((((.........)))))))..)))................. ( -7.54 = -5.77 + -1.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:04 2011