| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,548,699 – 9,548,760 |
| Length | 61 |
| Max. P | 0.566011 |
| Location | 9,548,699 – 9,548,760 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 89.34 |
| Shannon entropy | 0.18210 |
| G+C content | 0.50483 |
| Mean single sequence MFE | -14.00 |
| Consensus MFE | -12.70 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9548699 61 + 22422827 CUGGAAUCUGGCCACGAUUAAAAUGGCCGCACUCAGAUAGCCAGACUGCAUCCUCCAUUCA .((((....(((((.........)))))(((.((.........)).)))....)))).... ( -14.60, z-score = -1.01, R) >droEre2.scaffold_4690 13179260 54 - 18748788 CUGGAAUCUGGCCACGAUUAAAAUGGCCGUUCUCAGAUAGCCAGACUGCA---UCCA---- ((((.(((((((((.........)))))(....)))))..))))......---....---- ( -13.10, z-score = -0.78, R) >droYak2.chrX 18139374 54 + 21770863 CUGGAAUCUGGCCACGAUUAAAAUGGCCCUACUCAGAUAGCCAGACUGCA---UUCA---- ((((.(((((((((.........)))))......))))..))))......---....---- ( -12.70, z-score = -1.16, R) >droSec1.super_15 312383 58 + 1954846 CUGGAAUCUGGCCACGAUUAAAAUGGCCGCACUCAGAUAGCCAGACUGC---UUCCAUCCA .(((((...(((((.........)))))(((.((.........)).)))---))))).... ( -14.80, z-score = -1.24, R) >droSim1.chrX 7600832 58 + 17042790 CUGGAAUCUGGCCACGAUUAAAAUGGCCGCACUCAGAUAGCCAGACUGCA---UCCAUCCA .((((....(((((.........)))))(((.((.........)).))).---)))).... ( -14.80, z-score = -1.21, R) >consensus CUGGAAUCUGGCCACGAUUAAAAUGGCCGCACUCAGAUAGCCAGACUGCA___UCCAU_CA ((((.(((((((((.........)))))......))))..))))................. (-12.70 = -12.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:03 2011