| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,539,343 – 9,539,462 |
| Length | 119 |
| Max. P | 0.505229 |
| Location | 9,539,343 – 9,539,462 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.05 |
| Shannon entropy | 0.12013 |
| G+C content | 0.37412 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -21.70 |
| Energy contribution | -21.62 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9539343 119 + 22422827 -GCAAUUCGAUACACGCCACGAAAGUAUCGGAUCAACGAAAUUAAAACAUUAUUCGCUUGUGAGAAUUGCUCAAUUAAAGCAAUUCGUCAUUAUUGGGGAACCAAUUGAGGUUUUAUUUC -...(((((((((...........)))))))))....(((((.(((((...........((((((((((((.......)))))))).)))).(((((....)))))....)))))))))) ( -29.90, z-score = -2.86, R) >droSim1.chrX 7591468 119 + 17042790 -GCAAUUCGAUACACGCCACGAAAGUAUCGGAUCAACGAAAUUAAAACAUUAUUCGCUUGUGAGAAUUGCUCAAUUAAAGCAAUUCGUCAUUAUUGGGGAACCAAUUGAGGCAUUAUUUC -...(((((((((...........)))))))))......................((((((((((((((((.......)))))))).)))).(((((....)))))..))))........ ( -28.90, z-score = -2.57, R) >droSec1.super_15 303004 119 + 1954846 -GUAAUUCGAUACACGCCACGAAAGUAUCGGAUCAACGAAAUUAAAACAUUAUUCGCUUGUGAGAAUUGCUCAAUUAAAGAAAUUCGUUCUUAUUGGGGAACCAAUUGAGGCAUUAUUUC -(((((((..((((.((.((....)).(((......)))................)).)))).))))))).........(((((....(((((((((....)))).)))))....))))) ( -27.30, z-score = -2.04, R) >droEre2.scaffold_4690 13169888 120 - 18748788 GGCAAUACGAUCCGCGCCACCAAAGUGUUGGAUCAACGAAAUUAAAACAUUAUUCGCUUGUGGGAAUUGCUCAAUUAAACCAAUUCGUCAUUAUUGGGGAACCAAUUGAGGCUUUAUUUC ((((((..(((((((((.......))).))))))...................((.(....).))))))))...............(((...(((((....)))))...)))........ ( -25.60, z-score = -0.14, R) >droYak2.chrX 18129829 119 + 21770863 -GCAAUACGAUUCGCGCCACCAAAGUGUCGGAUCAACGAAAUUAAAACAUUAUAAGCUUGUGGGAAUUGCUCAAUUAAAGCAAUUCGUCAUUAUUGGGGAACCAAUUGAGGCUUUAUUUC -.......(((((((((.......))).))))))...(((((...........((((((((((((((((((.......)))))))).)))).(((((....)))))..)))))).))))) ( -30.10, z-score = -2.18, R) >consensus _GCAAUUCGAUACACGCCACGAAAGUAUCGGAUCAACGAAAUUAAAACAUUAUUCGCUUGUGAGAAUUGCUCAAUUAAAGCAAUUCGUCAUUAUUGGGGAACCAAUUGAGGCUUUAUUUC .(((((((..((((.((.((....)).(((......)))................)).)))).)))))))................(((...(((((....)))))...)))........ (-21.70 = -21.62 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:01 2011