| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,537,029 – 9,537,126 |
| Length | 97 |
| Max. P | 0.688370 |
| Location | 9,537,029 – 9,537,126 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 86.92 |
| Shannon entropy | 0.22797 |
| G+C content | 0.41180 |
| Mean single sequence MFE | -17.09 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.85 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9537029 97 + 22422827 AUCCACGGGCCACUUGGCACAGAAACCACGGAUAGUUGGAUGCGCGUAUACUGAUUCACAGAUACGACAAAAUGGCAAAACCAAAAAAAAAAAACAU ((((....(((....)))...(....)..))))..((((.(((.(((((.(((.....)))))))).(.....))))...))))............. ( -17.40, z-score = -0.74, R) >droSim1.chrX 7588890 94 + 17042790 AUCCACAGGCCACUUGGCACAGAAACCACGGAUAGUUGGAUGCGCGUAUACUGAUUCACAGAUACGACAAAAAUGGCAGAAAAAAACAAAAAAA--- ........((((.(((((.((....((((.....).))).)).))((((.(((.....)))))))..)))...)))).................--- ( -16.60, z-score = -0.89, R) >droYak2.chrX 18127077 96 + 21770863 AUCCACAGGCCACUUGGCACAGAAACCACGGAUAGUUGGAUGCGCGUAUACUGAUUCACAGAUACGAUAAAAA-ACAGCAAAAAAAACAAAAAACAU ((((....(((....)))...(....)..)))).((((......(((((.(((.....)))))))).......-.)))).................. ( -17.54, z-score = -2.03, R) >droEre2.scaffold_4690 13167285 87 - 18748788 AUCCACAGGCCACUUGGCACAGAAACCACGGAUUGUUGGAUGCGCGUAUACUGAUUCACAGAUACGACAAAA----------GAAAAAAAAAAACAU ((((((((.((...(((........))).)).))).)))))..((((((.(((.....)))))))).)....----------............... ( -16.80, z-score = -1.56, R) >consensus AUCCACAGGCCACUUGGCACAGAAACCACGGAUAGUUGGAUGCGCGUAUACUGAUUCACAGAUACGACAAAAA_GCAA_AAAAAAAAAAAAAAACAU ((((((..(((....))).......(....)...).)))))...(((((.(((.....))))))))............................... (-14.85 = -14.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:55 2011