| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,529,012 – 9,529,125 |
| Length | 113 |
| Max. P | 0.930420 |
| Location | 9,529,012 – 9,529,125 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.55 |
| Shannon entropy | 0.52538 |
| G+C content | 0.41429 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -16.20 |
| Energy contribution | -17.40 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9529012 113 + 22422827 CUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGCAACUUUGGCGGUACCGAAAUGCACGGAAAGAAAUUG ((((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).))))))))))..(((.......))).......... ( -35.10, z-score = -3.23, R) >droSim1.chrX 7581151 113 + 17042790 CUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGUAACUUUGGCGGUACCGAGAUGCACGGAAAUAAAUUA ((((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).))))))))))..(((.......))).......... ( -33.10, z-score = -2.67, R) >droSec1.super_15 292481 113 + 1954846 CUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGUAACUUUGGCGGUACCGAGAUGCACGGAAAGAAAUUA ((((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).))))))))))..(((.......))).......... ( -33.10, z-score = -2.68, R) >droYak2.chrX 18118856 113 + 21770863 CCGCAGAAGUGUGUGGGAUGCCGGCAAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAAGCUAAAAUUAGCAGCAUUGGCGGUACUGAGAUGCACAGAAAGAAAUGA ((((...(((((........((((..(((((.(((((....))))).)))))...))))(((((........))))).))))).))))..(((.......))).......... ( -25.40, z-score = 0.10, R) >droEre2.scaffold_4690 13159382 105 - 18748788 --------CUGCAGAAGCAGCCGGGAAAAUUGUAUAUUGUUAUGUGACGUUCAUUCCGGGCUAAUGCUAAAAUUAGCUACUUUGGCGGUACCGAGAUGCACAGAAAGAAAUGA --------((((....))))(((((((..(..((((....))))..)..)))...))))((((((......))))))...(((((((.........))).))))......... ( -23.80, z-score = 0.06, R) >droAna3.scaffold_13248 1323839 100 + 4840945 ---------CCUCUAAGGAGAAGG-GAAAUUGUAUAGAUAUUUGUCUUCCCGGCGAAGGAAUCUGGCUAAAUAUAGCCACUAUAUCCGAGCUUAAAGCCUCC---ACUAAUUG ---------.......((((..((-((........((((....))))))))(((...(((...((((((....)))))).....)))..)))......))))---........ ( -25.70, z-score = -1.17, R) >consensus CUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGCAACUUUGGCGGUACCGAGAUGCACGGAAAGAAAUUA ........((((((.((...(((((((((((.(((((....))))).))))).))))))(((((.((((....))))....)))))....))...))))))............ (-16.20 = -17.40 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:51 2011