Locus 13841

Sequence ID dm3.chrX
Location 9,494,496 – 9,494,592
Length 96
Max. P 0.577791
window19044

overview

Window 4

Location 9,494,496 – 9,494,592
Length 96
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.01
Shannon entropy 0.10234
G+C content 0.51454
Mean single sequence MFE -30.76
Consensus MFE -29.88
Energy contribution -29.64
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -0.92
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.577791
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9494496 96 - 22422827
GCUAUAAUUAGAAGCACUUGCAUCAUCAUCUUGACGGGGAACUGGAAUUCGGUGCCCCAAACGGUUCACGUGGUGGUGGGGUCAUGGUGGUUUCAU---
..........((((((((.((..(((((((.....((((.((((.....)))).))))..(((.....))))))))))..))...))).)))))..--- ( -31.20, z-score =  -1.37, R)
>droSim1.chrX_random 2737739 96 - 5698898
GCUAUAAUUAGAAGCACUUGCAUCAUCAUCUCGACGGGGAACUGGAAUUCGGUGCCCCAAACGGUUCACGUAGUGGUGGGGUCAUGGUGGUUUCAU---
..........(((((.....((((((.(((((.((((((.((((.....)))).))))..(((.....)))....))))))).)))))))))))..--- ( -28.90, z-score =  -0.94, R)
>droSec1.super_15 260398 95 - 1954846
GCUAUAAUUAGAAGCACUUGCAUCAUCAUCUCGACGGGGAACUGGAA-CCGGUGCCCCAAACGGUUCACGUGGUGGUGGGGUCAUGGUGGUUUCAU---
..........((((((((.((..(((((((.....((((.((((...-.)))).))))..(((.....))))))))))..))...))).)))))..--- ( -32.90, z-score =  -1.38, R)
>droYak2.chrX 18086618 95 - 21770863
GCUAUAAUUAGAAGCACUUGCAUCAUCAUCUCGACGGGGAACUGGAA-UUGGUGCCCCAAACGGUUCACGUGGUGGUGGGGUCAUGGUGGCUUCAU---
..........((((((((((.(((.(((((.(.(((..((((((...-((((....)))).)))))).))).).)))))))))).))).)))))..--- ( -32.40, z-score =  -1.58, R)
>droEre2.scaffold_4690 13127132 98 + 18748788
GCUAUAAUUAGAAGCACUUGCAUCAUCAUCUCGACGGGGAACUGGAA-UUGGUGCCCCAAACGGUUUACGUGGUGGUGGGGUCAUGGUGGCUUGCCCGU
.(((....)))(((((((.((..(((((((.....((((.(((....-..))).))))..(((.....))))))))))..))...))).))))...... ( -28.40, z-score =   0.70, R)
>consensus
GCUAUAAUUAGAAGCACUUGCAUCAUCAUCUCGACGGGGAACUGGAA_UCGGUGCCCCAAACGGUUCACGUGGUGGUGGGGUCAUGGUGGUUUCAU___
..........((((((((.((..(((((((.....((((.(((((...))))).))))..(((.....))))))))))..))...))).)))))..... (-29.88 = -29.64 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:49 2011