| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,494,054 – 9,494,137 |
| Length | 83 |
| Max. P | 0.821118 |
| Location | 9,494,054 – 9,494,137 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 83.65 |
| Shannon entropy | 0.31554 |
| G+C content | 0.60713 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -27.19 |
| Energy contribution | -26.62 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.819356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9494054 83 + 22422827 ACACCGACACACCAACACACAUGCGCAGGCCGGCGACGAGCCUCCUACGCGAGUGUGUGUGUGU-GAGUGCCGCACGUGUUGCC ....((((((....((((((((.(((((((((....)).)))).....))).))))))))((((-(.....))))))))))).. ( -37.10, z-score = -1.76, R) >droSim1.chrX_random 2737294 83 + 5698898 ACACCGACACACCAACACACAUGCGCAGGCCGGCGACGAGCCUCCUACGCGAGUGUGUGUGUGU-AAGUGCCGCACGUGUUGCC .(((..((((((..((((((.((((.(((..(((.....))).))).)))).))))))))))))-..)))..(((.....))). ( -35.30, z-score = -1.57, R) >droSec1.super_15 259956 83 + 1954846 ACACCGACACAACAACAUACAUGCGCAGGCCGGCGACGAGCUUCCUACGCGAGUGUGUGUGUGU-AAGUGCCGCACGUGUUGCC ....((((((....((((((.((((.(((..(((.....))).))).)))).))))))(((((.-......))))))))))).. ( -31.20, z-score = -0.71, R) >droYak2.chrX 18086208 81 + 21770863 ACACCGACACACCAACACACAUGCGCAGGCCGGCGACGAGCCUCCUACGCGAGUGUGUGUGUG---AGUGCCGCACGUGUUGCC ....((((((....((((((.((((.(((..(((.....))).))).)))).))))))(((((---.....))))))))))).. ( -35.90, z-score = -1.94, R) >droEre2.scaffold_4690 13126726 84 - 18748788 ACACCGACACACCAACACACAUGCGCAGGCCGGCGACGAGCCUCCUACGCGAAUGUGUGUGUGUUGAGUGCCGCACGUGUUGCC .(((((((((((..(((((..((((.(((..(((.....))).))).))))..))))))))))))).)))..(((.....))). ( -34.80, z-score = -1.72, R) >droWil1.scaffold_180777 1516901 76 - 4753960 ACACACACACAGCAACUCGUGAGUGCGCGUCGUCGACUCGCCGUGUAUGCGUGUGUGUGUGUG-----UUCAAUGUAUGUU--- ((((((((((((((((.(((((((.((......))))))).)).)).))).))))))))))).-----.............--- ( -30.40, z-score = -1.18, R) >consensus ACACCGACACACCAACACACAUGCGCAGGCCGGCGACGAGCCUCCUACGCGAGUGUGUGUGUGU__AGUGCCGCACGUGUUGCC ....((((((....((((((.((((.(((..(((.....))).))).)))).))))))(((((........))))))))))).. (-27.19 = -26.62 + -0.58)
| Location | 9,494,054 – 9,494,137 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 83.65 |
| Shannon entropy | 0.31554 |
| G+C content | 0.60713 |
| Mean single sequence MFE | -37.82 |
| Consensus MFE | -25.26 |
| Energy contribution | -26.90 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9494054 83 - 22422827 GGCAACACGUGCGGCACUC-ACACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGU .(((.....))).(((((.-((((((((((((..(((((((.(((.....)))..)))))))..))))))..)))))).))))) ( -43.30, z-score = -2.53, R) >droSim1.chrX_random 2737294 83 - 5698898 GGCAACACGUGCGGCACUU-ACACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGU .(((.....))).(((((.-((((((((((((..(((((((.(((.....)))..)))))))..))))))..)))))).))))) ( -43.30, z-score = -2.78, R) >droSec1.super_15 259956 83 - 1954846 GGCAACACGUGCGGCACUU-ACACACACACACUCGCGUAGGAAGCUCGUCGCCGGCCUGCGCAUGUAUGUUGUUGUGUCGGUGU .(((.....))).(((((.-(((((((((.((..(((((((..((.....))...)))))))..)).)).)).))))).))))) ( -31.00, z-score = -0.16, R) >droYak2.chrX 18086208 81 - 21770863 GGCAACACGUGCGGCACU---CACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGU ....((((...((((((.---(.((.((((((..(((((((.(((.....)))..)))))))..))))))))).)))))))))) ( -39.60, z-score = -1.67, R) >droEre2.scaffold_4690 13126726 84 + 18748788 GGCAACACGUGCGGCACUCAACACACACACAUUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGU ....((((...((((((((((((((((.......(((((((.(((.....)))..))))))).)))))))))).)))))))))) ( -40.30, z-score = -2.11, R) >droWil1.scaffold_180777 1516901 76 + 4753960 ---AACAUACAUUGAA-----CACACACACACACGCAUACACGGCGAGUCGACGACGCGCACUCACGAGUUGCUGUGUGUGUGU ---.............-----.(((((((((((.(((.((.((..((((((......)).)))).)).)))))))))))))))) ( -29.40, z-score = -2.40, R) >consensus GGCAACACGUGCGGCACU__ACACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGU ....((((...((((((....((.(((((((...(((((((.(((.....)))..))))))).)))))))))..)))))))))) (-25.26 = -26.90 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:48 2011