| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,760,034 – 10,760,130 |
| Length | 96 |
| Max. P | 0.814007 |
| Location | 10,760,034 – 10,760,130 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.31 |
| Shannon entropy | 0.32998 |
| G+C content | 0.56871 |
| Mean single sequence MFE | -13.92 |
| Consensus MFE | -10.79 |
| Energy contribution | -11.04 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.814007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10760034 96 + 23011544 UUUAUGGCUCCAAAUGCUGUUACCCCUUUACGACAGCCCCCUCACCCUUGGCUUUUUCCAAUUCCCCUUCCCCCAUCGCCGCCGCCACUGUGAUUG-- ....((((.......((((((..........))))))............(((.........................)))...)))).........-- ( -14.01, z-score = -1.58, R) >droSim1.chr2L 10559613 82 + 22036055 UUUAUGGCUCCAAAUGCUGUUUCCCCUUUACGACAGCCCC-UCACCCUUGGCUUUU-------------CCCCCACCGCCGCCGCCACUGUGAUUG-- ....((((.......((((((..........))))))...-........(((....-------------........)))...)))).........-- ( -14.60, z-score = -1.73, R) >droYak2.chr2L 7165214 83 + 22324452 UUUAUGGCUCCAAAUGCUGUUACCCCUUUACGACAGCCCC--CACCUCUGGCCUUU-------------CUAACCCCCCUGCCGCCACUGAGCUUGUG .....(((((.....((((((..........))))))...--......((((....-------------..............))))..))))).... ( -14.37, z-score = -1.64, R) >droEre2.scaffold_4929 11970068 84 - 26641161 UUUAUGGCUCCAAAUGCUGUUUCCCCUUUACGACAGCCCC-UCACCCGUGACUCUCG-----------UGACCCUCUGCCGCCGCCCCUGUGAUUG-- .....(((.......((((((..........))))))...-......((.((....)-----------).)).....)))..(((....)))....-- ( -12.70, z-score = -0.98, R) >consensus UUUAUGGCUCCAAAUGCUGUUACCCCUUUACGACAGCCCC_UCACCCUUGGCUUUU_____________CCCCCACCGCCGCCGCCACUGUGAUUG__ .....(((.......((((((..........))))))............(((............................))))))............ (-10.79 = -11.04 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:54 2011