| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,493,280 – 9,493,387 |
| Length | 107 |
| Max. P | 0.993809 |
| Location | 9,493,280 – 9,493,387 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 73.78 |
| Shannon entropy | 0.48080 |
| G+C content | 0.46194 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -21.37 |
| Energy contribution | -22.82 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.64 |
| SVM RNA-class probability | 0.993809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9493280 107 + 22422827 GAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAUAUA----GAGAUACGCAGUUUAACUGCG-UUGGUUAUUC------ ........(((((.....((((((((((........)))).....((((.(((.....))))))))))))).....----.....((((((.....)))))-).)))))...------ ( -34.30, z-score = -3.07, R) >droAna3.scaffold_13248 1417140 86 - 4840945 ---------------GAAAAAUUUGGUGGGAAUCGAUAUCAAUAAC----CCCAAACGAUGGUCAGAUAGUGUACG--GACGACUAGGUGGCUCAACUUUA-----GUAUUC------ ---------------......(((((.((..((.(....).))..)----))))))...((((((..((((((...--.)).))))..)))).))......-----......------ ( -15.30, z-score = 0.80, R) >droEre2.scaffold_4690 13125985 111 - 18748788 GAAAAGUUUGGCCGCCUCGUCGUCGAUGUCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGUCAGGCGACAGUUACGCAGAGAUACGCAGUUCUACUGCG-CUGGUUAUUC------ ........(((((((...(((((((((((......))))).....((((.(((.....)))))))))))))......(((((((........))).)))))-).)))))...------ ( -33.80, z-score = -2.32, R) >droYak2.chrX 18085383 118 + 21770863 GAAAAGUUCGGCCGCUUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUACGCGGAGAUACGCAGUUUUACUGCGACUGGUUAUCUUUCUUC ((((..(((((((((.((((((((((((........)))).....((((.(((.....))))))))))))).))...)))).....(((((.....))))).))))..)..))))... ( -38.60, z-score = -2.93, R) >droSec1.super_15 259206 107 + 1954846 GAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGUCAGGCGACAGAUA----GAGAUACGCAGUUUUACUGCG-CUGGUUAUUC------ ........((((((((((((((((((((........)))).....((((.(((.....))))))))))))).))).----.......((((.....)))))-).)))))...------ ( -32.40, z-score = -2.30, R) >droSim1.chrX_random 2736530 107 + 5698898 GAAAAGUUUGGCCGCGUCGUCGUCGAUGUCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUA----GAGAUACGCAGUUUUACUGCG-CUGGUUAUUC------ ........(((((((((((((((((((((......))))).....((((.(((.....))))))))))))).))).----.......((((.....)))))-).)))))...------ ( -36.00, z-score = -3.40, R) >consensus GAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUA____GAGAUACGCAGUUUUACUGCG_CUGGUUAUUC______ ........(((((.....((((((((((........)))).....((((.(((.....)))))))))))))...............(((((.....)))))...)))))......... (-21.37 = -22.82 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:46 2011