| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,487,180 – 9,487,287 |
| Length | 107 |
| Max. P | 0.821876 |
| Location | 9,487,180 – 9,487,287 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 72.28 |
| Shannon entropy | 0.51437 |
| G+C content | 0.31259 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -9.60 |
| Energy contribution | -10.05 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9487180 107 + 22422827 UUGACUUGACAAUUGCAGUAUUUAACAAUUGCCCAGAUAUAAAAUCAUAUCGCUUGAUAUGAGGUAAUUGAAAAGUCAAAAUAGAGAA--GAGUUUAUACCAACACCUU (((((((..(((((((.((((((...........))))))....(((((((....))))))).)))))))..))))))).........--................... ( -21.80, z-score = -2.84, R) >droSim1.chrX_random 2729311 107 + 5698898 UUGACUUGACAAUUGCAAUAUUUAACAAUUGCCCAGAUAUAAAAUCAUAUCGCUUGAUAUGAGGUAAUUGAAAAGUCAAGAUAGAGAA--GAGUUUAUACCAACAGCUU (((((((..(((((((.((((((...........))))))....(((((((....))))))).)))))))..))))))).........--................... ( -21.50, z-score = -2.45, R) >droSec1.super_15 253858 107 + 1954846 UUGACUUGACAAUUGCAAUAUUUAACAAUUGCGCAGAUAUAAAAUCAUAUCGCUUGAUAUGAGGUAAUUGAAAAGUCAAGAUAGAGAA--GAGUUUAUACCAACAGCUU (((((((..(((((((.((((((...........))))))....(((((((....))))))).)))))))..))))))).........--................... ( -21.50, z-score = -1.98, R) >droEre2.scaffold_4690 13119556 97 - 18748788 UUGACUUGCCAAUUGCAGUAUUUUACAAUUGCCCAGAUAUAAACUAA--UCGCUUGAUAUGAGGUAAUUGAAAAGUCAUGAUAAUGAA--GUGUUUAUAUC-------- ..............(((((........)))))...((((((((((((--(..(((......)))..)))).....((((....)))).--..)))))))))-------- ( -16.00, z-score = -0.33, R) >droYak2.chrX 18079873 104 + 21770863 UUGACUUGACAAUUGCGAUAUUUUACAAUUGACCCGAUAUCAAAUAA--UAGCUUGA---AAAGUCACUGAAAAGUCAAGACAAUGUUUUAAGUUUAUAUUUGCAGCUC ..((.(((.((((((..(....)..)))))).........((((((.--.(((((((---((.((((((....)))...)))....)))))))))..))))))))).)) ( -18.90, z-score = -1.26, R) >droAna3.scaffold_13248 1408558 93 - 4840945 GAGACUUUACAAUGCCAGUAUUCCACGAUAUGCCAGAUACGUAAUAU--UUUCUAUA---AAGAUUAUUGUAGUAUU-UGCCAGGUAA--UCGUUUAUCUC-------- ((((....((..((((.((((........))))(((((((..((((.--..(((...---.))).))))...)))))-))...)))).--..))...))))-------- ( -15.00, z-score = -0.61, R) >consensus UUGACUUGACAAUUGCAAUAUUUAACAAUUGCCCAGAUAUAAAAUAA__UCGCUUGAUAUGAGGUAAUUGAAAAGUCAAGAUAGAGAA__GAGUUUAUACCAACAGCUU (((((((..(((((((.(((((.............)))))............(((.....))))))))))..))))))).............................. ( -9.60 = -10.05 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:44 2011