Locus 13834

Sequence ID dm3.chrX
Location 9,452,511 – 9,452,611
Length 100
Max. P 0.602688
window19035

overview

Window 5

Location 9,452,511 – 9,452,611
Length 100
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 89.10
Shannon entropy 0.14868
G+C content 0.29328
Mean single sequence MFE -19.35
Consensus MFE -16.13
Energy contribution -16.58
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.23
SVM RNA-class probability 0.602688
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9452511 100 - 22422827
UGUGUUUGGGUACUGUAUACCUAAAUGUAAAAUCCAUUUUCAAAGGUGACUAGAUGAAUUUAAC-----AAGAAAUAACCCGUAAUAUGAAAAACUACAUCUAGU
((..((((((((.....))))))))..)).....(((((....)))))((((((((.((((...-----...))))....(((...)))........)))))))) ( -17.10, z-score =  -0.89, R)
>droSim1.chrX 9470619 102 + 17042790
UGUGUUUGGGUACUCUUAACCUAAAUGUAAAAUCCAUUUUCAAAGGUGACUAGAUGAGUUUAACAA---AAAGAAAAACCCAAAAUAUGAAAAACUAGAUCUAGU
((..(((((((.......)))))))..)).....(((((....)))))(((((((.(((((..((.---..................))..)))))..))))))) ( -17.11, z-score =  -0.98, R)
>droSec1.super_15 218553 105 - 1954846
UGUGUUUGGGUACUCUAAACCUAAAUGUAAAAUCCAUUUUCAAAGGUGACUAGAUGGGUUUAACAAAAAAAAAAAAAACCCAUUAUAUGAAAAACUACAUCUAGU
((..(((((((.......)))))))..)).......((((((.((....)).(((((((((..............)))))))))...))))))............ ( -23.84, z-score =  -3.12, R)
>consensus
UGUGUUUGGGUACUCUAAACCUAAAUGUAAAAUCCAUUUUCAAAGGUGACUAGAUGAGUUUAACAA___AAAAAAAAACCCAUAAUAUGAAAAACUACAUCUAGU
((..(((((((.......)))))))..)).....(((((....)))))(((((((((((((..............................))))).)))))))) (-16.13 = -16.58 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:41 2011