Locus 13832

Sequence ID dm3.chrX
Location 9,448,548 – 9,448,615
Length 67
Max. P 0.894769
window19029 window19030

overview

Window 9

Location 9,448,548 – 9,448,615
Length 67
Sequences 6
Columns 67
Reading direction forward
Mean pairwise identity 74.83
Shannon entropy 0.48953
G+C content 0.49875
Mean single sequence MFE -18.57
Consensus MFE -9.95
Energy contribution -11.48
Covariance contribution 1.53
Combinations/Pair 1.27
Mean z-score -1.70
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.12
SVM RNA-class probability 0.894769
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9448548 67 + 22422827
UAUUUUCUAGCCACUCAAGCGCAAUCGAUAGUGAGCGGGGCCGUUAAUCGCAGCUAUCGAUUGGCCU
..................((.(((((((((((..((((.........)))).))))))))))))).. ( -22.20, z-score =  -1.77, R)
>droYak2.chrX 18042163 63 + 21770863
UAUUUUAUAGCCACCC----ACAAUCGAUAGUGAGCGACGCCGUUAAUCGCACCUAUCGAUUGGCCU
................----.((((((((((.(.((((.........)))).))))))))))).... ( -18.60, z-score =  -3.79, R)
>droEre2.scaffold_4690 13081572 67 - 18748788
UAUUUUAUAGCCACUCACGCGCAUUCGAUAGUGAGCGACGCCGUUAAUCGCACCUAUCGAUUGGCCU
..................((.((.(((((((.(.((((.........)))).)))))))).)))).. ( -17.60, z-score =  -1.57, R)
>droSec1.super_15 215409 67 + 1954846
UAUUUUCUAGCCACUCUCGCGCAAUCGAUAGUGAGCGGCGACGUUAAUCACAGCUAUCGAUUGGCCU
..................((.(((((((((((.((((....)))).......))))))))))))).. ( -21.60, z-score =  -2.35, R)
>droSim1.chrX 9467296 67 - 17042790
UAUUUUCUAGCCACUCUCGCGCAAUCGAUAGUGAGCGGCGACGUUAAUCGCAGCUAUCGAUAGACCU
.....(((((((......).))..((((((((.....((((......)))).))))))))))))... ( -17.90, z-score =  -0.75, R)
>anoGam1.chr2R 23551825 64 - 62725911
CAGUUUCU--CCAUCCAGGAGC-UCCGAUUGUGAGAGAUUUUCCACCGGGCUACUUCCUGUCAACCG
.(((((((--(((....((...-.))...)).))))))))......(((...((.....))...))) ( -13.50, z-score =   0.02, R)
>consensus
UAUUUUCUAGCCACUCACGCGCAAUCGAUAGUGAGCGACGCCGUUAAUCGCAGCUAUCGAUUGGCCU
.....................(((((((((((.((((....)))).......))))))))))).... ( -9.95 = -11.48 +   1.53)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 0

Location 9,448,548 – 9,448,615
Length 67
Sequences 6
Columns 67
Reading direction reverse
Mean pairwise identity 74.83
Shannon entropy 0.48953
G+C content 0.49875
Mean single sequence MFE -20.93
Consensus MFE -11.32
Energy contribution -12.80
Covariance contribution 1.48
Combinations/Pair 1.32
Mean z-score -1.54
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.822628
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9448548 67 - 22422827
AGGCCAAUCGAUAGCUGCGAUUAACGGCCCCGCUCACUAUCGAUUGCGCUUGAGUGGCUAGAAAAUA
((((((((((((((..(((...........)))...)))))))))).))))................ ( -20.70, z-score =  -1.47, R)
>droYak2.chrX 18042163 63 - 21770863
AGGCCAAUCGAUAGGUGCGAUUAACGGCGUCGCUCACUAUCGAUUGU----GGGUGGCUAUAAAAUA
.((((((((((((((.(((((.......))))).).))))))))...----...)))))........ ( -22.40, z-score =  -2.87, R)
>droEre2.scaffold_4690 13081572 67 + 18748788
AGGCCAAUCGAUAGGUGCGAUUAACGGCGUCGCUCACUAUCGAAUGCGCGUGAGUGGCUAUAAAAUA
.((((..((((((((.(((((.......))))).).)))))))....((....))))))........ ( -24.90, z-score =  -2.61, R)
>droSec1.super_15 215409 67 - 1954846
AGGCCAAUCGAUAGCUGUGAUUAACGUCGCCGCUCACUAUCGAUUGCGCGAGAGUGGCUAGAAAAUA
.((((((((((((((.(((((....))))).)))....))))))))(((....))))))........ ( -22.00, z-score =  -1.82, R)
>droSim1.chrX 9467296 67 + 17042790
AGGUCUAUCGAUAGCUGCGAUUAACGUCGCCGCUCACUAUCGAUUGCGCGAGAGUGGCUAGAAAAUA
...((((((((((((.(((((....))))).)))....)))))...(((....)))..))))..... ( -19.20, z-score =  -0.40, R)
>anoGam1.chr2R 23551825 64 + 62725911
CGGUUGACAGGAAGUAGCCCGGUGGAAAAUCUCUCACAAUCGGA-GCUCCUGGAUGG--AGAAACUG
(((((..((...((.((((((((.((.......))...))))).-))).))...)).--...))))) ( -16.40, z-score =  -0.04, R)
>consensus
AGGCCAAUCGAUAGCUGCGAUUAACGGCGCCGCUCACUAUCGAUUGCGCGUGAGUGGCUAGAAAAUA
.(((((((((((((..(((...........)))...))))))))))(((....))))))........ (-11.32 = -12.80 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:37 2011