| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,445,535 – 9,445,639 |
| Length | 104 |
| Max. P | 0.921752 |
| Location | 9,445,535 – 9,445,639 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 67.71 |
| Shannon entropy | 0.41258 |
| G+C content | 0.30897 |
| Mean single sequence MFE | -14.70 |
| Consensus MFE | -9.94 |
| Energy contribution | -8.95 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9445535 104 + 22422827 UCUAUAAUGUGUCUUCAACAAACGAAGACACUUUCGCAAGGGGAUUUCUUUAGGUUUCAUUUUUUGUUGGUUUCAUUUUCAUUUGUUUUGUUUGUUUGUGGUUG .((((((.((((((((.......))))))))....((((((.((........((..(((........)))..))........)).))))))....))))))... ( -19.09, z-score = -1.02, R) >dp4.chrXL_group1a 1622653 80 - 9151740 UCUCUAACGUGUCUUCUACAAACGAAGACAAUU-CACAAGAAAGUUAUCUAAA----CACUUUUUAUAAGUUUUCCUUUCUUUUG------------------- .........(((((((.......)))))))...-((.(((((((......(((----(...........))))..))))))).))------------------- ( -12.50, z-score = -2.11, R) >droPer1.super_13 122710 80 - 2293547 UCUCUAACGUGUCUUCUACAAACGAAGACAAUU-CACAAGAAAGUUAUCUAAA----CACUUUUUUUAAGUUUUCCUUUCUUUUG------------------- .........(((((((.......)))))))...-((.(((((((......(((----(...........))))..))))))).))------------------- ( -12.50, z-score = -1.96, R) >consensus UCUCUAACGUGUCUUCUACAAACGAAGACAAUU_CACAAGAAAGUUAUCUAAA____CACUUUUUAUAAGUUUUCCUUUCUUUUG___________________ .........(((((((.......)))))))....((.(((((((...............................))))))).))................... ( -9.94 = -8.95 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:36 2011