| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,439,393 – 9,439,503 |
| Length | 110 |
| Max. P | 0.976112 |
| Location | 9,439,393 – 9,439,503 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.34 |
| Shannon entropy | 0.39788 |
| G+C content | 0.41613 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -20.51 |
| Energy contribution | -19.99 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.976112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9439393 110 + 22422827 ------AACGGCAAUUACCAAAGUCAAUGUCAAAGUUAGCAAUCUGCCAAGUUGACGACUUAAUUUCAUGUCGAAUUGC-GGAACUGA---UUGCGAUUCGAUGUGACAGCGGUGAAAAG ------........(((((.(((((...(((((..((.((.....)).)).))))))))))....((((((((((((((-((......---))))))))))))))))....))))).... ( -34.20, z-score = -2.97, R) >droSim1.chrX 7516959 109 + 17042790 ------AACGGCAAUUACCAAAGUCAAUGUCAA-GUUAGCAAUCUGCCAAGUUGACGACUUAAUUUCAUGUCGAAUUGC-GGAACUCA---UUGCGAUUCGACGUGACAGCGGUGAAAAG ------........(((((.(((((...(((((-.((.((.....)).)).))))))))))....((((((((((((((-((......---))))))))))))))))....))))).... ( -39.40, z-score = -4.57, R) >droSec1.super_15 206325 109 + 1954846 ------AACGGCAAUUACCACAGUCAAUGUCAA-GUUAGCAAUCUGCCAAGUUGACGACUUAAUUUCAGGUCGAAUUGC-GGAACUGA---UUGCGAUUCGAUGUGACAGCGGUGAAAAG ------........(((((.(((((...(((((-.((.((.....)).)).))))))))).....(((.((((((((((-((......---)))))))))))).)))..).))))).... ( -35.00, z-score = -2.85, R) >droYak2.chrX 18032744 109 + 21770863 ------AACGGCAAUUACCAAAGUCAAAAUCAA-GUUAACAAUCUGUCAAGUUGACGACUUAAUUUCAUGUCGUAUUGC-GGACCUGA---UUGCGAUUCGAUGUGACAGCGGUGAAAAG ------........(((((.(((((....((((-.((.((.....)).)).)))).)))))....((((((((.(((((-((......---))))))).))))))))....))))).... ( -27.70, z-score = -1.38, R) >droEre2.scaffold_4690 13072795 109 - 18748788 ------AACGGCAAUUAACGAAGUCAAAGUCAA-GUUAGCAAUCUGCCAAGUUGACGACUUAAUUUCAUGUCGAACUGC-GGAAUUGA---UUGCGAUUCGAUGUGACAGCGGUGAAAAG ------.((.((........(((((...(((((-.((.((.....)).)).))))))))))....((((((((((.(((-((......---))))).))))))))))..)).))...... ( -31.90, z-score = -2.10, R) >droAna3.scaffold_13334 1488584 118 - 1562580 UAGCUUCAUGUAAAGUAUCCUAAUUAAUUCCCA-CUUAUCGCUGACCGAAAGUAAUCACAUAAUUU-GUGUCAAUUUGUUGGAACUGUCGCUUGAGAGUUGGCCCAUUUGCGAUUUGAUG ..((((......)))).................-(..(((((...((((((((...((((.....)-)))...)))).))))((((.((....)).)))).........)))))..)... ( -19.60, z-score = 0.65, R) >consensus ______AACGGCAAUUACCAAAGUCAAUGUCAA_GUUAGCAAUCUGCCAAGUUGACGACUUAAUUUCAUGUCGAAUUGC_GGAACUGA___UUGCGAUUCGAUGUGACAGCGGUGAAAAG ..............(((((...............((((((..........)))))).........((((((((((((((..............))))))))))))))....))))).... (-20.51 = -19.99 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:33 2011