| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,393,385 – 9,393,476 |
| Length | 91 |
| Max. P | 0.523970 |
| Location | 9,393,385 – 9,393,476 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Shannon entropy | 0.30892 |
| G+C content | 0.43713 |
| Mean single sequence MFE | -27.59 |
| Consensus MFE | -14.90 |
| Energy contribution | -14.86 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9393385 91 + 22422827 UGGGAUUUAGUUGGUCU-------CAAAGUCUCUGGGCUUUAUCCUGGCCAAGCCGAGUCAUA----------AACAAAUACGGUUUGCUGCUGUUUUGUUUACAUUC-- ...((((..(((((((.-------.((((((....)))))).....)))).)))..)))).((----------((((((.(((((.....))))))))))))).....-- ( -26.10, z-score = -2.14, R) >droEre2.scaffold_4690 13027660 94 - 18748788 ----UUGGGGUCGGUUUGGGCGGCCAGAGUCUCUAGGUUUUAUCCUGGCCAAGCCGAGUCAUA----------AACAAAUACGGUUUGCUGCUGUUUUGUUUACAUUC-- ----...((.(((((((((..(((....))).(((((......)))))))))))))).)).((----------((((((.(((((.....))))))))))))).....-- ( -34.00, z-score = -3.19, R) >droYak2.chrX 17985027 97 + 21770863 ------UAGGUAGGUCUG-------AAAGUCUCGAGGUUUUAUCCUGGCCAAGCCGAGUAAUACCGAGUAAUAAACAAAUACGGUUUGCUGCUGUUUUGUUUACAUUCGC ------..((((...((.-------.........(((......)))(((...))).))...))))((((..((((((((.(((((.....))))))))))))).)))).. ( -23.00, z-score = -0.61, R) >droSec1.super_15 159988 97 + 1954846 -UGGAUUUGGUUGGUCUGUUCUCUCAAAGUCUCUGGGUUUUAUCCUGGCCAAGCCGAGUCAUA----------AACAAAUACGGUUUGCUGCUGUUUUGUUUACAUUC-- -..(((((((((((((......((((.......)))).........)))).))))))))).((----------((((((.(((((.....))))))))))))).....-- ( -28.06, z-score = -2.81, R) >droSim1.chrX 7488215 97 + 17042790 -UGGAUUUAGUUGGUCUGGGCUCUCAAAGUCUCUGGGUUUUAUCCUGGCCAAGCCGAGUCAUA----------AACAAAUACGGUUUGCUGCUGUUUUGUUUACAUUC-- -..((((..(((((((.(((((.....)))))..(((......))))))).)))..)))).((----------((((((.(((((.....))))))))))))).....-- ( -26.80, z-score = -1.73, R) >consensus __GGAUUUGGUUGGUCUG__C___CAAAGUCUCUGGGUUUUAUCCUGGCCAAGCCGAGUCAUA__________AACAAAUACGGUUUGCUGCUGUUUUGUUUACAUUC__ ............................(.(((.(((......)))(((...)))))).).............((((((.(((((.....)))))))))))......... (-14.90 = -14.86 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:27 2011