| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,382,341 – 9,382,433 |
| Length | 92 |
| Max. P | 0.684271 |
| Location | 9,382,341 – 9,382,433 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 66.87 |
| Shannon entropy | 0.55866 |
| G+C content | 0.40071 |
| Mean single sequence MFE | -21.25 |
| Consensus MFE | -12.78 |
| Energy contribution | -11.98 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9382341 92 - 22422827 ---CAAUGGAGCAA--AAAGCUGCUUCGAAUUGAGUGCUGCAAGCAGCUUAACUUUGUUG------UAGCCUCAACUUUUUGCUUUUUUUUUUUAGCGACCAA-------- ---...(((((((.--.....)))))))..(((((.(((((((.(((.......))))))------)))))))))....(((((..........)))))....-------- ( -24.90, z-score = -0.97, R) >droAna3.scaffold_13334 1412885 111 + 1562580 CAAGAGCGGAAAAGGCAAAGCUGCUUUGAAUCGACUACUGCCAGUAGCUUAAUUUUGUUGACUUUUUCUUACCAUUUUUCCAUUUUUUUCAUUUUUUUUUAUAGUGCCAAG .(((((.(((((((...((((((((.................)))))))).........((.....))......))))))).)))))........................ ( -13.03, z-score = 1.97, R) >droEre2.scaffold_4690 13016885 78 + 18748788 ---CAAUGGGGCAA--AAAGCUGCUUCGCAUUGAGUGCUGCAAGCAGCUUAACUUUGUUG------UAUCCCCAACUUU--UUUGCACCAA-------------------- ---...(((.((((--((((((((((.(((........))))))))))))......((((------......))))...--))))).))).-------------------- ( -26.80, z-score = -2.47, R) >droYak2.chrX 17973663 93 - 21770863 ---CAAUGGGGCAA--AAAGCUGCUUCGAAUUGAGUGCUGCAAGCAGCUUAACUUUGUUG------UAUCCCCAACUUUUCUUUUUACCAAAACCCCCCCCCAA------- ---...(((((...--.(((((((((((..........)).)))))))))......((((------......))))......................))))).------- ( -22.20, z-score = -1.72, R) >droSec1.super_15 149304 92 - 1954846 ---CAAUGGGGCAA--AAAGCUGCUUCGAAUUGAGUGCUGCAAGCAGCUUAACUUUGUUG------UAUCCCCAACUUUUUUUCUUUUUUUUUUAUCAACCAA-------- ---...(((((...--.(((((((((((..........)).))))))))).((......)------)..))))).............................-------- ( -19.30, z-score = -0.65, R) >consensus ___CAAUGGGGCAA__AAAGCUGCUUCGAAUUGAGUGCUGCAAGCAGCUUAACUUUGUUG______UAUCCCCAACUUUUCUUUUUUUUAAUUUAUC_ACCAA________ ...((((..((......(((((((((((..........)).)))))))))..))..))))................................................... (-12.78 = -11.98 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:25 2011