Locus 1382

Sequence ID dm3.chr2L
Location 10,751,239 – 10,751,290
Length 51
Max. P 0.971922
window1883 window1884

overview

Window 3

Location 10,751,239 – 10,751,290
Length 51
Sequences 3
Columns 51
Reading direction forward
Mean pairwise identity 93.46
Shannon entropy 0.09003
G+C content 0.56863
Mean single sequence MFE -14.50
Consensus MFE -14.50
Energy contribution -14.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.86
SVM RNA-class probability 0.971922
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 10751239 51 + 23011544
CGGUCGCGAGUUCUCCGUACUCACAACCCCGGAUAAACUCAACAGCGACGG
..((((((((((.((((............))))..)))))....))))).. ( -14.50, z-score =  -1.76, R)
>droSec1.super_3 6168726 51 + 7220098
CGGUCGCGAGUUCUCCGUACUCACAACUCCGGAUAAACUCAACAGCGACGG
..((((((((((.((((............))))..)))))....))))).. ( -14.50, z-score =  -1.95, R)
>droYak2.chr2L 7155980 51 + 22324452
CGGUCGCGAGUUCUCCGUAUUCCUAACUCCGGAUAAACUCAACUGCGACGG
..((((((((((.((((............))))..)))))....))))).. ( -14.50, z-score =  -1.79, R)
>consensus
CGGUCGCGAGUUCUCCGUACUCACAACUCCGGAUAAACUCAACAGCGACGG
..((((((((((.((((............))))..)))))....))))).. (-14.50 = -14.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 10,751,239 – 10,751,290
Length 51
Sequences 3
Columns 51
Reading direction reverse
Mean pairwise identity 93.46
Shannon entropy 0.09003
G+C content 0.56863
Mean single sequence MFE -17.40
Consensus MFE -17.40
Energy contribution -17.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.74
SVM RNA-class probability 0.964615
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 10751239 51 - 23011544
CCGUCGCUGUUGAGUUUAUCCGGGGUUGUGAGUACGGAGAACUCGCGACCG
..(((((....((((((.((((............))))))))))))))).. ( -17.40, z-score =  -1.24, R)
>droSec1.super_3 6168726 51 - 7220098
CCGUCGCUGUUGAGUUUAUCCGGAGUUGUGAGUACGGAGAACUCGCGACCG
..(((((....((((((.((((............))))))))))))))).. ( -17.40, z-score =  -1.84, R)
>droYak2.chr2L 7155980 51 - 22324452
CCGUCGCAGUUGAGUUUAUCCGGAGUUAGGAAUACGGAGAACUCGCGACCG
..(((((....((((((.((((............))))))))))))))).. ( -17.40, z-score =  -2.15, R)
>consensus
CCGUCGCUGUUGAGUUUAUCCGGAGUUGUGAGUACGGAGAACUCGCGACCG
..(((((....((((((.((((............))))))))))))))).. (-17.40 = -17.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:52 2011