| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,354,375 – 9,354,475 |
| Length | 100 |
| Max. P | 0.694872 |
| Location | 9,354,375 – 9,354,475 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 94.06 |
| Shannon entropy | 0.08103 |
| G+C content | 0.45636 |
| Mean single sequence MFE | -30.60 |
| Consensus MFE | -30.77 |
| Energy contribution | -30.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.83 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9354375 100 + 22422827 UUGGCAUUUUGCAAUUGGCAUUUUGCAUUUGGCAGCCGAAUCAUCGGUGAUUGAGCAACUUCAAGGCUGGGUUCUCCCAUGGAGAAGGUUUUUGUCGAGU-- ...(((...(((.....)))...)))(((((((((((((....)))))....((((..(((((....((((....)))))))))...)))).))))))))-- ( -28.80, z-score = -0.36, R) >droSec1.super_15 122337 99 + 1954846 UUGGCAUUUUGCAAUUGGCAUUUUGCAUUUGGCAGCCGAAUCU---GUGAUUGAGCAACUCCAAGGCUGGGUUCUCCCAUGGAGAAGAUUUUUGCCGAGUUU ...(((...(((.....)))...)))(((((((((..((((((---((......))..(((((....((((....))))))))).))))))))))))))).. ( -31.50, z-score = -1.06, R) >droSim1.chrX 7452690 99 + 17042790 UUGGCAUUUUGCAAUUGGCAUUUUGCAUUUGGCAGCCGAAUCU---GUGAUUGAGCAACUCCAAGGCUGGGUUCUCCCAUGGAGAAGAUUUUUGCCGAGUUU ...(((...(((.....)))...)))(((((((((..((((((---((......))..(((((....((((....))))))))).))))))))))))))).. ( -31.50, z-score = -1.06, R) >consensus UUGGCAUUUUGCAAUUGGCAUUUUGCAUUUGGCAGCCGAAUCU___GUGAUUGAGCAACUCCAAGGCUGGGUUCUCCCAUGGAGAAGAUUUUUGCCGAGUUU ...(((...(((.....)))...)))((((((((((..((((......))))..))..(((((....((((....)))))))))........)))))))).. (-30.77 = -30.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:19 2011