Locus 13815

Sequence ID	dm3.chrX
Location	9,344,203 – 9,344,269
Length	66
Max. P	0.697889

overview

Window 4

Location	9,344,203 – 9,344,269
Length	66
Sequences	5
Columns	70
Reading direction	reverse
Mean pairwise identity	92.46
Shannon entropy	0.12983
G+C content	0.44009
Mean single sequence MFE	-18.96
Consensus MFE	-17.80
Energy contribution	-17.84
Covariance contribution	0.04
Combinations/Pair	1.05
Mean z-score	-1.21
Structure conservation index	0.94
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.44
SVM RNA-class probability	0.697889
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 9344203 66 - 22422827
AUAACCGCUGACAGUUUUGAGUGAUUUGGCGGUU----CAACGAGUCGUAUGCGUGAUAUGUAUGUGACA
..((((((..(..(((......))))..))))))----......(((((((((((...))))))))))). ( -18.60, z-score =  -1.20, R)
>droSim1.chrX 7441238 66 - 17042790
AUAACCGCUGACAGUUUUGAGUGAUUUGGCGGUU----CAACGAGUCGUAUGCGUGAUAUGUAUGUGACA
..((((((..(..(((......))))..))))))----......(((((((((((...))))))))))). ( -18.60, z-score =  -1.20, R)
>droSec1.super_15 112356 66 - 1954846
AUAACCGCUGACAGUUUUGAGUGAUUUGGCGGUU----CAACGAGUCGUAUGCGUGAUAUGUAUGUGACA
..((((((..(..(((......))))..))))))----......(((((((((((...))))))))))). ( -18.60, z-score =  -1.20, R)
>droYak2.chrX 17934489 70 - 21770863
ACAACCGCUGACAGUUCUGAGUGAUUUGGCGGUUCAACCAACUAGUCGUAUGCGUGAUAUGUAUAUGACA
..((((((..(....((.....)).)..))))))..........(((((((((((...))))))))))). ( -22.20, z-score =  -2.20, R)
>droEre2.scaffold_4690 12977926 66 + 18748788
ACAACCGCUGACAUUUGUGAGUGAUUUGGCGGUU----CAACUAGUCGUAUACGUGAUAUGCAUGUGACA
..((((((..(((((....))))..)..))))))----.........((.((((((.....)))))))). ( -16.80, z-score =  -0.27, R)
>consensus
AUAACCGCUGACAGUUUUGAGUGAUUUGGCGGUU____CAACGAGUCGUAUGCGUGAUAUGUAUGUGACA
..((((((..(((.(....).))..)..))))))..........(((((((((((...))))))))))). (-17.80 = -17.84 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:17 2011