| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,330,444 – 9,330,508 |
| Length | 64 |
| Max. P | 0.718574 |
| Location | 9,330,444 – 9,330,508 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 81.50 |
| Shannon entropy | 0.32832 |
| G+C content | 0.57234 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.08 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9330444 64 - 22422827 CCGCCCGCCUUUUACCGGGCUCACGGGGCGUAUGUGGAAUGCGCC-----UGAGGCUUUGGCUAGACUU ..(((.(((((...(((......)))(((((((.....)))))))-----.)))))...)))....... ( -26.00, z-score = -1.25, R) >droSim1.chrX 7427534 59 - 17042790 -----CGCCUUUUACCGGGCUCACGGGGCGUAUGUGGAAUGCGCC-----UGAGGCUUUGGCUAGACUU -----.(((((...(((......)))(((((((.....)))))))-----.)))))............. ( -22.00, z-score = -1.36, R) >droSec1.super_15 99215 59 - 1954846 -----CGCCUUUUACCGGGCUCACGGGGCGUAUGUGAAAUGCGCC-----UGAGGCUUUGGCUAGAAUU -----.(((((...(((......)))(((((((.....)))))))-----.)))))............. ( -22.00, z-score = -1.72, R) >droYak2.chrX 17920068 59 - 21770863 -----CGCCUUUUACCGGGCUCACGGGGCGUAUGUGGAAUGCGCC-----UGAGGCUUUGGCUAGACUU -----.(((((...(((......)))(((((((.....)))))))-----.)))))............. ( -22.00, z-score = -1.36, R) >droEre2.scaffold_4690 12964557 59 + 18748788 -----CGCCUUCUACCGGGCUCACGGGGCGUAUGUGGAAUGCGCC-----UGAGGCUUUGGCUAGACUU -----.(((((...(((......)))(((((((.....)))))))-----.)))))............. ( -22.00, z-score = -1.10, R) >droAna3.scaffold_13334 1358425 64 + 1562580 -----UUCCCUGGGCUGGGCCAACAGGGCGUAUGUGCAAUAUAUUAUAUGUCAGGAGUUAGAUAGUCUU -----((((((((((...)))..)))((((((((..........)))))))).))))............ ( -13.30, z-score = 0.93, R) >consensus _____CGCCUUUUACCGGGCUCACGGGGCGUAUGUGGAAUGCGCC_____UGAGGCUUUGGCUAGACUU ......(((((...(((......)))(((((((.....)))))))......)))))............. (-18.69 = -18.08 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:12 2011