| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,330,307 – 9,330,397 |
| Length | 90 |
| Max. P | 0.940404 |
| Location | 9,330,307 – 9,330,397 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 75.14 |
| Shannon entropy | 0.46205 |
| G+C content | 0.29307 |
| Mean single sequence MFE | -13.49 |
| Consensus MFE | -9.12 |
| Energy contribution | -9.32 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940404 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 9330307 90 + 22422827 ------UAUAUAAAUAAUAUACACCAUCAUAUCUAAUACUUAUGAUCAUUUAGAGGAAAUUCAAAUUUUACUGCCCACUCGGGCAAACUUUUGGGA ------.................(((((...(((((.............))))).))..............(((((....)))))......))).. ( -14.12, z-score = -1.34, R) >droEre2.scaffold_4690 12964414 96 - 18748788 AAUAUACUCGUAAAUAAUAAAUACCAACAUUUUUAAUACUUUUGAUCAUUUUGAAGAAAUUCAAAUUUUACAGCCCACUCGGGCAAACUUUUGUGA ....(((..(((((..................((((.....))))....((((((....)))))).))))).((((....))))........))). ( -15.20, z-score = -2.26, R) >droYak2.chrX 17919931 90 + 21770863 ------UAUACAAAUAAUAAAUACCAUCAUAUUUAAUGCUUUUGAUCAUUUAGAAGAUAUACAAAUUUUACUGCCCGCUCGGGCAAACUUUUGCUA ------...........((((((......))))))...(((((((....))))))).....((((......(((((....)))))....))))... ( -13.90, z-score = -1.55, R) >droSec1.super_15 99078 90 + 1954846 ------UAUAUAAAUAAUAUACACCAUCAUAUUUAAUACUUUUGAUCACUUAGAGGAAAAUCAAAUUUUACUGCCCACUCGGGCAAACUUUUGGGA ------.................(((............(((((((....)))))))...............(((((....)))))......))).. ( -14.50, z-score = -1.87, R) >droSim1.chrX 7427397 90 + 17042790 ------UAUAUAAAUAAUGUACACCAUCAUAUUUAAUACUUUUGAUCAUUUAGAGGAAAUUCAAAUUUUACUGCCCACUCGGGCAAACUUUUGGGA ------....((((((.((........))))))))...(((((((....)))))))...((((((......(((((....)))))....)))))). ( -15.70, z-score = -1.59, R) >droWil1.scaffold_181096 9687005 77 - 12416693 ----------UAUAUAUUUAAU----UCGUAUUCAUUGCUUUUAGC-----AAAAGAACUACAACUUUAACUGCUCAUCCUAGCCAAUCCUUAUGA ----------............----(((((...((((((...(((-----(((((........))))...))))......)).))))...))))) ( -7.50, z-score = -0.60, R) >consensus ______UAUAUAAAUAAUAAACACCAUCAUAUUUAAUACUUUUGAUCAUUUAGAAGAAAUUCAAAUUUUACUGCCCACUCGGGCAAACUUUUGGGA ......................................(((((((....)))))))................((((....))))............ ( -9.12 = -9.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:11 2011