| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,323,835 – 9,323,978 |
| Length | 143 |
| Max. P | 0.691357 |
| Location | 9,323,835 – 9,323,978 |
|---|---|
| Length | 143 |
| Sequences | 4 |
| Columns | 170 |
| Reading direction | reverse |
| Mean pairwise identity | 79.47 |
| Shannon entropy | 0.30881 |
| G+C content | 0.47378 |
| Mean single sequence MFE | -44.50 |
| Consensus MFE | -31.05 |
| Energy contribution | -32.17 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9323835 143 - 22422827 ------------------------CAAACUUUUUUUGAAGUCAAUUUUU-CUACUAAUGGCCCGCUGGGGCCAUGUCUUGAUCGCCCAUUUCUCUCGGGGAUUUGCACUUG--GGCACUUGAACUGCUUUCGCUGGGCUGUUUAAGAUCUGUCGGAUUUGGGCUCUUAUC ------------------------...(((((....))))).......(-(.....(((((((....))))))).....))..(((((..(((..((((....(((.....--.)))(((((((.((((.....)))).))))))).))))..)))..)))))....... ( -45.30, z-score = -2.74, R) >droEre2.scaffold_4690 12957813 162 + 18748788 CCAACUUUUUGAAGUCAUUUUUGUUAAAGCGUGCUCCAAAGCGCUGUU--AUACUAAUGGGCUGCUGGC----UGCCUUAAUCACCCAUUUCUCUCGGGGAUUUGCACUUG--GCCACUUGAACUGCUUUUGCUGGGCUAUUUAAGGCCUGGCGGAUUUGGGCUCUUAUC ((((....((.((((((((..(((...(((((........)))))...--)))..))))((((...((.----(((...((((.(((.........))))))).))))).)--))))))).)).....(((((..((((......))))..))))).))))......... ( -46.50, z-score = -0.40, R) >droSec1.super_15 92848 141 - 1954846 ------------------------CAAAC--UUUUUGAAGUCAAUUUUU-CUACUAAUGGCCCGCUUGGGC--UGUCUUUAUCGCCCAUUUCUCUCGGGGAUUUGCACUUGAGGGCACUUGAACUGCUUUCGCUGGGCUGUUUAAGACCUGGCGGAUUUGGGCUCUUAUC ------------------------.....--.....((((......)))-).....(((((((....))))--))).......(((((..(((.(((((....(((........)))(((((((.((((.....)))).))))))).))))).)))..)))))....... ( -43.00, z-score = -1.92, R) >droSim1.chrX_random 2700051 141 - 5698898 ------------------------CAAAC---UUUUGAAGUCAAUUUUUGUUACUAAUGGCCCGCUUGGGC--UGUCUUUAUCGCCCAUUUCUCUCGGGGAUUUGCACUUGGGGGCACUUGAACUGCUUUCGCUGGGCUGUUUAAGACCUGGCGGAUUUGGGCUCUUAUC ------------------------((((.---..(((....)))..))))......(((((((....))))--))).......(((((..(((.(((((....(((........)))(((((((.((((.....)))).))))))).))))).)))..)))))....... ( -43.20, z-score = -1.60, R) >consensus ________________________CAAAC__UUUUUGAAGUCAAUUUUU_CUACUAAUGGCCCGCUGGGGC__UGUCUUUAUCGCCCAUUUCUCUCGGGGAUUUGCACUUG__GGCACUUGAACUGCUUUCGCUGGGCUGUUUAAGACCUGGCGGAUUUGGGCUCUUAUC ...........................................................((((....))))............(((((..(((..((((....(((........)))(((((((.((((.....)))).))))))).))))..)))..)))))....... (-31.05 = -32.17 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:10 2011