| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,319,887 – 9,319,945 |
| Length | 58 |
| Max. P | 0.852145 |
| Location | 9,319,887 – 9,319,945 |
|---|---|
| Length | 58 |
| Sequences | 9 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 81.24 |
| Shannon entropy | 0.39165 |
| G+C content | 0.60275 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -12.06 |
| Energy contribution | -11.79 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9319887 58 - 22422827 CCCGCUUGACUUGGC-UAACAUGUUUUUGGCUCACCACUUGGCCGCAUGUUGCCCCCUG ............(((-.(((((((....((((........))))))))))))))..... ( -15.80, z-score = -1.88, R) >droSec1.super_15 88893 58 - 1954846 CCCGCUUGACUUGGC-UAACAUGUUUUUGGCUCACCACUUGGCCGCAUGUUGCCCCCUG ............(((-.(((((((....((((........))))))))))))))..... ( -15.80, z-score = -1.88, R) >droEre2.scaffold_4690 12953896 58 + 18748788 CCCGCGUGACUUGGC-UAACAUGCUUUUGGCUCACCACUUGGCCGCAUGUUGCCCCCUG ............(((-.(((((((....((((........))))))))))))))..... ( -17.20, z-score = -1.79, R) >dp4.chrXL_group1a 1471387 58 + 9151740 CCCGCUUGACUUGGC-UAACAUGCUUUUGGCUCGCCACUUGGCCGCAUGUUGGCCCCCC ............(((-((((((((....((((........))))))))))))))).... ( -22.00, z-score = -3.06, R) >droPer1.super_15 2158002 58 + 2181545 CCCGCUUGACUUGGC-UAACAUGCUUUUGGCUCGCCACUUGGCCGCAUGUUGGCCCCCC ............(((-((((((((....((((........))))))))))))))).... ( -22.00, z-score = -3.06, R) >droWil1.scaffold_181096 9674936 52 + 12416693 --CGGUUGACUUGGC-UAACAUGCCUUUGGCGCGCCGCUUGGCCGCAUGUUGCCU---- --..........(((-.(((((((....((((...)))).....)))))))))).---- ( -17.30, z-score = -0.15, R) >droVir3.scaffold_12970 5939403 59 - 11907090 CCCGCUUGACUUGGCCUGACAUGCCUCUGGCGCACCACGGAGCCGCAUGUUGAACGAGU ........(((((..(.((((((((((((........)))))..))))))))..))))) ( -19.50, z-score = -1.35, R) >droMoj3.scaffold_6473 1253752 59 + 16943266 CUCGCUUGACUUGGCCCGACAUGCCUUUGGCGCACCGCGUAGCCGCAUGUUGAGCUAGU ..........(((((.((((((((.....((((...))))....)))))))).))))). ( -20.70, z-score = -1.19, R) >droGri2.scaffold_14853 803621 56 + 10151454 CUCGCUUGACUUGGCUUGACAUGCCUUUGGCGCACCGCGUAGCCGCAUGUUGAACG--- ...(((......)))(..((((((.....((((...))))....))))))..)...--- ( -16.70, z-score = -0.94, R) >consensus CCCGCUUGACUUGGC_UAACAUGCUUUUGGCUCACCACUUGGCCGCAUGUUGCCCCCUG ...(((......))).((((((((....(((..........)))))))))))....... (-12.06 = -11.79 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:07 2011