| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,317,828 – 9,317,883 |
| Length | 55 |
| Max. P | 0.971626 |
| Location | 9,317,828 – 9,317,883 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 62.69 |
| Shannon entropy | 0.64489 |
| G+C content | 0.41340 |
| Mean single sequence MFE | -12.23 |
| Consensus MFE | -6.08 |
| Energy contribution | -6.10 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9317828 55 - 22422827 -----------------CUAAGCUCCAUGCAGCCGCAUAAUUUUGCGGUAUUCUCAGUUAGCCAUUAGAGAU -----------------....((.....)).((((((......))))))..((((............)))). ( -13.60, z-score = -1.78, R) >droPer1.super_15 2155651 55 + 2181545 -----------------AGAACCGCCAUCCAGCCGCAUCAUUUUGCGGUUUUUUCUCUCUGGCCAGAGAGGU -----------------.............(((((((......)))))))...(((((((....))))))). ( -18.40, z-score = -2.46, R) >droYak2.chrX 17905885 55 - 21770863 -----------------CUAAGCUCCAAGCUACCGCAUAAUUUUGCGGUAUUUUCAGUUGGCCAUUAGAGAU -----------------((((...((((.((((((((......))))))......))))))...)))).... ( -14.30, z-score = -2.11, R) >droEre2.scaffold_4690 12951839 55 + 18748788 -----------------UUAAGCUCCAAGCAGCCGCAUAUUUUUGCGGUAUUUUCAGUUACUCAUUAGAGAU -----------------....((.....)).((((((......))))))...........(((....))).. ( -13.30, z-score = -2.91, R) >droSec1.super_15 86855 53 - 1954846 -----------------CUAAGCUCCAUGCAGACGCAUAAUAUUGCGGUAUUCUCAGUUAGAGAUUAGAU-- -----------------((((((.....))...((((......))))....((((.....))))))))..-- ( -11.20, z-score = -1.11, R) >droSim1.chrX 7417056 55 - 17042790 -----------------CUAAGCUCCAUGCAGACGCAUAAUUUUGCGGUAUUCUCAGUUAGAAAUUAGAGAU -----------------....((.....))...((((......))))....(((((((.....))).)))). ( -9.30, z-score = -0.40, R) >triCas2.chrUn_115 62396 71 - 112887 UCAGCCAUUCCAUUUUAGCGAACGGGACACU-UUGCACAAAUUUUUAGAUUUUAUUUUCAGUUCUUACGAAC .................(((((.(.....))-))))........................((((....)))) ( -5.50, z-score = 0.30, R) >consensus _________________CUAAGCUCCAUGCAGCCGCAUAAUUUUGCGGUAUUUUCAGUUAGACAUUAGAGAU ...............................((((((......))))))....................... ( -6.08 = -6.10 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:06 2011