| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,314,435 – 9,314,544 |
| Length | 109 |
| Max. P | 0.802057 |
| Location | 9,314,435 – 9,314,544 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.27 |
| Shannon entropy | 0.23601 |
| G+C content | 0.43108 |
| Mean single sequence MFE | -24.42 |
| Consensus MFE | -19.34 |
| Energy contribution | -19.65 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.802057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9314435 109 + 22422827 AUUUUGCCAGCCAUAGUUUGCAUACCUGCAUUGUCUGCUCGCCAGAGAGACACAAAGCAACGCAAAAGAUGAGUGAAAAAGACGAGCCCGGCAAAAAAAAAGAAACAUG .(((((((.(((((..(((((.....(((..(((((.(((....))))))))....)))..)))))..))).((.......))..))..)))))))............. ( -26.40, z-score = -2.14, R) >droSim1.chrX 7414169 105 + 17042790 AUUUUGCCAGCCAUAGUUUGCAUACCUGCAUUGUCUGCUCCCCAGAGA--CACAAAACAACGCAAAAGAUGAGUGAAAAAGACGGGCCCGGCAAGAAAAAAAAAAUG-- .(((((((.(((...((((.(((...(((.((((.(((((....))).--))....)))).)))....)))........)))).)))..)))))))...........-- ( -23.60, z-score = -1.41, R) >droSec1.super_15 83970 93 + 1954846 AUUUUGCCAGCCAUAGUUUGCAUACCUGCAUUGUCUGCUCGCCAGAGA--CACAAAACAACGCAAAA------------AGACGGGCCCGGCAAAAAAAA--AAACAUG .(((((((.(((...((((.......(((.((((.(((((....))).--))....)))).)))...------------)))).)))..)))))))....--....... ( -23.60, z-score = -1.85, R) >droEre2.scaffold_4690 12947361 104 - 18748788 AUUUUGCCAGCCAUAGUUUGCAUACCUGCAUUGUCUGCUCGCCAGAGA--CACAAAACAACGCAAAAGAUGUG-AAAAAAGACGGGCUAUGCAAAAAAAAAAAUAUG-- .((((((.((((....((..(((...(((.((((.(((((....))).--))....)))).)))....)))..-))........))))..))))))...........-- ( -24.10, z-score = -1.81, R) >consensus AUUUUGCCAGCCAUAGUUUGCAUACCUGCAUUGUCUGCUCGCCAGAGA__CACAAAACAACGCAAAAGAUGAG_GAAAAAGACGGGCCCGGCAAAAAAAAAAAAACA__ .(((((((.(((...(((((((....))).((((...(((....)))....))))........................)))).)))..)))))))............. (-19.34 = -19.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:28:05 2011